halophFGD

Basic Information

Locus ID: Ag4G02774

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Belongs to the universal ribosomal protein uS5 family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr4	310004319	310010601	+	Ag4G02774

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.78	58,340.78 Da	38.86	77.60	-0.73

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00333	Ribosomal protein S5, N-terminal domain	348	412	1.2E-18	IPR013810
Pfam	PF03719	Ribosomal protein S5, C-terminal domain	426	493	7.2E-22	IPR005324
SUPERFAMILY	SSF54768	dsRNA-binding domain-like	343	413	2.72E-16	-
SUPERFAMILY	SSF54211	Ribosomal protein S5 domain 2-like	417	495	2.15E-19	IPR020568
Gene3D	G3DSA:3.30.230.10	-	413	503	1.0E-27	IPR014721
Gene3D	G3DSA:3.30.160.20	-	296	409	1.9E-19	-
ProSiteProfiles	PS50881	S5 double stranded RNA-binding domain profile.	348	411	15.91929	IPR013810
MobiDBLite	mobidb-lite	consensus disorder prediction	120	156	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	130	144	-	-
Coils	Coil	Coil	251	278	-	-
Coils	Coil	Coil	318	341	-	-

Gene Ontology

Biological Process:

GO:0006412 (translation)

Molecular Function:

GO:0003723 (RNA binding) GO:0003735 (structural constituent of ribosome)

Cellular Component:

GO:0005840 (ribosome)

KEGG Pathway

KO Term:

K02988 (small subunit ribosomal protein S5)

Pathway:

ko03010 (Ribosome) map03010 (Ribosome)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G64880.1	Ribosomal protein S5 family protein.
RefSeq	XP_017237212.1	PREDICTED: uncharacterized protein LOC108210440 [Daucus carota subsp. sativus]
Swiss-Prot	Q2LQC0	Small ribosomal subunit protein uS5 OS=Syntrophus aciditrophicus (strain SB) OX=56780 GN=rpsE PE=3 SV=1
TrEMBL	A0A165ZGZ1	S5 DRBM domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_008779 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	42.336639	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	17.085773	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	15.091681	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	17.448582	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	16.680872	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	12.340726	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	13.189	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	7.459697	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	36.040821	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	38.396729	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	42.10342	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	45.817978	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	42.339947	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	33.300205	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	9.016754	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	12.497479	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	13.456764	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	13.624146	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	15.35518	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	15.571236	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	13.337072	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	23.811228	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	26.460508	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	26.960468	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	23.366713	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	18.158346	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	16.879311	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	15.430288	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	19.220951	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	3.101046		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	6.273147		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	6.634466		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	11.340247		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	24.633348		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	10.264421		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	10.810255		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	4.064249		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	5.959873		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	24.556438	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	17.940172	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	9.210681	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	10.583723	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	6.926126	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	22.945103	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	14.17798	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	19.701221	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	10.452053	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	45.018105	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	48.164013	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	44.353024	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	1	jg2699
Aizoaceae	Mesembryanthemum crystallinum	1	gene_19431
Amaranthaceae	Atriplex hortensis	1	Ah000407
Amaranthaceae	Beta vulgaris	1	BVRB_5g119050
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg30695, Sbi_jg58578
Amaranthaceae	Salicornia europaea	1	Seu_jg28447
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00005002
Amaranthaceae	Suaeda glauca	2	Sgl55051, Sgl60303
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000006253, gene:ENSEOMG00000021417 ... gene:ENSEOMG00000024521
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.5AG0024600, CQ.Regalona.r1.5BG0026050
Anacardiaceae	Pistacia vera	1	pistato.v30247330
Apiaceae	Apium graveolens	1	Ag4G02774
Arecaceae	Cocos nucifera	2	COCNU_07G011000, COCNU_10G008140
Arecaceae	Phoenix dactylifera	1	gene-LOC103720772
Asparagaceae	Asparagus officinalis	1	AsparagusV1_07.1759.V1.1
Asteraceae	Flaveria trinervia	1	Ftri13G07291
Brassicaceae	Arabidopsis thaliana	1	AT1G64880.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10002490m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp5g19120.v2.2
Brassicaceae	Brassica nigra	1	BniB05g054350.2N
Casuarinaceae	Casuarina glauca	2	Cgl09G1874, Cgl09G1901
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno05g02390, gene.Cymno10g05340
Dunaliellaceae	Dunaliella salina	1	Dusal.0942s00006.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate04g25480, gene.Thate08g04520
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG03.1860
Plantaginaceae	Plantago ovata	1	Pov_00032381
Plumbaginaceae	Limonium bicolor	2	Lb2G08836, Lb5G28779
Poaceae	Echinochloa crus-galli	3	AH01.3940, BH01.4337, CH01.4570
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_2AG0098560, gene-QOZ80_2BG0152030
Poaceae	Lolium multiflorum	1	gene-QYE76_019367
Poaceae	Oryza coarctata	2	Oco03G000120, Oco04G000150
Poaceae	Oryza sativa	1	LOC_Os02g01230.1
Poaceae	Paspalum vaginatum	1	gene-BS78_04G003000
Poaceae	Puccinellia tenuiflora	3	Pt_Chr0200540, Pt_Chr0200544, Pt_Chr0703049
Poaceae	Sporobolus alterniflorus	2	Chr0G010640, Chr0G010950
Poaceae	Thinopyrum elongatum	1	Tel7E01G902200
Poaceae	Triticum dicoccoides	2	gene_TRIDC7AG072890, gene_TRIDC7BG068970
Poaceae	Triticum aestivum	3	TraesCS7A02G519600.1, TraesCS7B02G435700.1 ... TraesCS7D02G509300.1
Poaceae	Zea mays	1	Zm00001eb229290_P002
Poaceae	Zoysia japonica	1	nbis-gene-52299
Poaceae	Zoysia macrostachya	1	Zma_g14794
Portulacaceae	Portulaca oleracea	2	evm.TU.LG01.2374, evm.TU.LG14.1543
Posidoniaceae	Posidonia oceanica	2	gene.Posoc01g05120, gene.Posoc06g20840
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_2_RagTag.1720
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-3462
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-14386
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-13957
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000009l.260
Rhizophoraceae	Kandelia obovata	1	Maker00005837
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-12769
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-16440
Salicaceae	Populus euphratica	4	populus_peu16260, populus_peu16261, populus_peu16269 ... populus_peu16270
Solanaceae	Lycium barbarum	1	gene-LOC132613856
Solanaceae	Solanum chilense	1	SOLCI006089400
Solanaceae	Solanum pennellii	1	gene-LOC107004881
Tamaricaceae	Reaumuria soongarica	1	gene_6175
Tamaricaceae	Tamarix chinensis	1	TC01G0058
Zosteraceae	Zostera marina	1	Zosma02g23480.v3.1