Basic Information
Locus ID:
Ag4G02757
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Short Name:
COL9
Description:
Zinc finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 309532885 | 309537062 | - | Ag4G02757 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.32 | 44,408.22 Da | 53.88 | 60.50 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd19821 | Bbox1_BBX-like | 47 | 84 | 9.5358E-11 | - |
| CDD | cd19821 | Bbox1_BBX-like | 5 | 47 | 4.21631E-14 | - |
| Pfam | PF06203 | CCT motif | 346 | 388 | 5.9E-15 | IPR010402 |
| SMART | SM00336 | bboxneu5 | 48 | 87 | 0.26 | IPR000315 |
| SMART | SM00336 | bboxneu5 | 4 | 47 | 7.0E-10 | IPR000315 |
| ProSiteProfiles | PS50119 | Zinc finger B-box type profile. | 1 | 47 | 9.641247 | IPR000315 |
| ProSiteProfiles | PS50119 | Zinc finger B-box type profile. | 43 | 87 | 9.186067 | IPR000315 |
| ProSiteProfiles | PS51017 | CCT domain profile. | 346 | 388 | 14.663759 | IPR010402 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 334 | 348 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 333 | 361 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G48250.1 | B-box type zinc finger protein with CCT domain. | 0 |
| RefSeq | XP_017238354.1 | PREDICTED: zinc finger protein CONSTANS-LIKE 9-like [Daucus carota subsp. sativus] | 0 |
| Q9LUA9 | Zinc finger protein CONSTANS-LIKE 10 OS=Arabidopsis thaliana OX=3702 GN=COL10 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6L5B892 | Zinc finger protein CONSTANS-LIKE 9-like OS=Apium graveolens OX=4045 GN=AG4045_002719 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 3.454167 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 1.925755 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 2.151875 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 1.834674 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 2.828606 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 1.164434 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 2.461218 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 1.111851 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 0.429054 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 0.579287 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 1.133531 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 0.763637 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 0.852983 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 0.599042 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 2.569173 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 2.290132 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 1.364262 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 2.046985 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 2.632454 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 1.357529 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 1.188674 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0.982196 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 2.056304 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0.743209 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0.698814 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 1.588512 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 1.74819 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 2.37588 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 1.935572 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.205372 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.066486 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.145053 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.265387 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 2.232273 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0.108509 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.166183 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0.236296 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.060157 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 1.954398 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 1.475931 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 2.535515 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 3.853468 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 2.980087 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 3.880741 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 9.455276 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 8.966147 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 12.317265 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg19064, jg20518, jg21128, jg24094 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_25780 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah037485, Ah037486 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g208530 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg41783, Sbi_jg41789, Sbi_jg41792, Sbi_jg48337 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg27665 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00021121, GOSA_00021122 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl79388, Sgl81855 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000018553, gene:ENSEOMG00000038943 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.9AG0005650, CQ.Regalona.r1.9BG0016130 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30015610, pistato.v30016840 |
| Apiaceae | Apium graveolens | 9 | Ag11G03216, Ag11G03331, Ag2G00077, Ag3G00194, Ag4G02757 ... |
| Arecaceae | Cocos nucifera | 3 | COCNU_01G006590, COCNU_01G013400, COCNU_11G006050 |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103714696, gene-LOC103715879, gene-LOC103716788 ... |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.529.V1.1, AsparagusV1_05.2184.V1.1 |
| Asteraceae | Flaveria trinervia | 5 | Ftri15G16947, Ftri3G03929, Ftri4G04291, Ftri7G07720 ... |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G07650.1, AT5G48250.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10004423m.g.v1.0, Thhalv10020967m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp2g18620.v2.2, Sp3g06590.v2.2 |
| Brassicaceae | Brassica nigra | 6 | BniB01g056300.2N, BniB02g069440.2N, BniB03g023870.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G2238 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G2328 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g07090 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate04g26030, gene.Thate04g26860 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 3 | nbisL1-mrna-2624, nbisL1-mrna-6438, nbisL1-mrna-9797 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.2292 |
| Plantaginaceae | Plantago ovata | 4 | Pov_00001386, Pov_00006108, Pov_00031781, Pov_00035479 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G07133, Lb7G35041 |
| Poaceae | Echinochloa crus-galli | 6 | AH06.1209, AH07.3281, BH06.1258, BH07.3100, CH06.1391 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0143890, gene-QOZ80_2BG0199290 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.6HG0610970.1, HORVU.MOREX.r3.7HG0673610.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_025265 |
| Poaceae | Oryza coarctata | 4 | Oco03G020280, Oco04G020960, Oco11G007720, Oco12G007750 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g49230.2, LOC_Os06g19444.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G259200, gene-BS78_10G124300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0203580, Pt_Chr0404366 |
| Poaceae | Sporobolus alterniflorus | 8 | Chr06G003370, Chr09G021330, Chr10G001210, Chr11G017540 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel6E01G522900, Tel7E01G396100 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC6AG043790, gene_TRIDC6BG051370 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS6A02G286400.3, TraesCS6B02G315400.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb189080_P001, Zm00001eb253150_P001 ... |
| Poaceae | Zoysia japonica | 4 | nbis-gene-21983, nbis-gene-45608, nbis-gene-52627 ... |
| Poaceae | Zoysia macrostachya | 4 | Zma_g14309, Zma_g17053, Zma_g29530, Zma_g31771 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.1545, evm.TU.LG15.1727 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g15100, gene.Posoc02g18380 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_5_RagTag.1653, evm.TU.Scaffold_9_RagTag.1453 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-12149, nbisL1-mrna-20606 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-11183, nbisL1-mrna-8136 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-10868, nbisL1-mrna-21444 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000003l.913, evm.TU.utg000006l.952 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00009570, Maker00013612 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-10483, nbisL1-mrna-13901 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-15589, nbisL1-mrna-4625 |
| Salicaceae | Populus euphratica | 1 | populus_peu26860 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132617534, gene-LOC132636693, gene-LOC132641013 |
| Solanaceae | Solanum chilense | 3 | SOLCI000418400, SOLCI001629500, SOLCI005231200 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107007493, gene-LOC107020550, gene-LOC107026393 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.22926_chr05_-, STRG.29728_chr10_+ |
| Tamaricaceae | Tamarix chinensis | 3 | TC01G1937, TC01G1938, TC03G0122 |
| Zosteraceae | Zostera marina | 1 | Zosma05g21950.v3.1 |