Basic Information
Locus ID:
Ag4G02746
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Short Name:
MBD8
Description:
methyl-CpG-binding domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 309280715 | 309289810 | + | Ag4G02746 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.12 | 140,107.83 Da | 45.00 | 72.36 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF54171 | DNA-binding domain | 372 | 420 | 7.52E-7 | IPR016177 |
| SMART | SM00384 | AT_hook_2 | 253 | 265 | 0.59 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 210 | 222 | 1.5 | IPR017956 |
| ProSiteProfiles | PS50982 | Methyl-CpG-binding domain (MBD) profile. | 366 | 439 | 9.577217 | IPR001739 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G22310.2 | methyl-CPG-binding domain 8. Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins. | 0 |
| RefSeq | XP_017241685.1 | PREDICTED: uncharacterized protein LOC108214275 isoform X1 [Daucus carota subsp. sativus] | 0 |
| Q9LME6 | Methyl-CpG-binding domain-containing protein 8 OS=Arabidopsis thaliana OX=3702 GN=MBD8 PE=2 SV=1 | 0 | |
| TrEMBL | A0A165ZFU6 | MBD domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_008741 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 24.889696 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 17.039358 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 16.599667 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 19.555918 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 20.437399 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 21.902292 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 19.086624 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 20.767897 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 24.612852 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 24.189041 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 25.63781 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 28.945805 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 26.756739 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 21.451874 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 5.993402 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 5.724399 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 6.164362 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 8.634504 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 5.870413 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 8.740419 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 11.335782 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 10.419702 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 10.790338 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 9.032329 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 8.47429 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 12.835023 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 9.692367 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 10.495819 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 10.516438 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 3.508575 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 5.800896 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 4.762187 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 13.622211 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 9.223858 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 12.18631 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 5.120178 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 3.559587 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 3.876278 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 14.917643 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 9.192855 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 5.247198 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 12.439116 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 15.701908 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 16.346764 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 15.15505 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 10.932249 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 13.003235 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 10.91032 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 10.885098 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 10.18181 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg1258, jg22637 |
| Aizoaceae | Mesembryanthemum crystallinum | 4 | gene_21840, gene_21844, gene_21849, gene_26596 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah009792, Ah023896 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_1g009040, BVRB_9g215220 |
| Amaranthaceae | Salicornia bigelovii | 5 | Sbi_jg12088, Sbi_jg12089, Sbi_jg29321, Sbi_jg3553 ... |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg21294, Seu_jg6408 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00000865, GOSA_00009644 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl11791, Sgl11947, Sgl17280, Sgl59839 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000002304, gene:ENSEOMG00000013866 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.1AG0011740, CQ.Regalona.r1.1BG0014250 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30041030, pistato.v30249230 |
| Apiaceae | Apium graveolens | 1 | Ag4G02746 |
| Arecaceae | Cocos nucifera | 1 | COCNU_13G003150 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103707977, gene-LOC103722397, gene-LOC120111032 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.253.V1.1 |
| Asteraceae | Flaveria trinervia | 4 | Ftri10G08538, Ftri15G29481, Ftri18G03603, Ftri8G14219 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G22310.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10007200m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g19810.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g030160.2N |
| Casuarinaceae | Casuarina equisetifolia | 3 | Ceq03G1337, Ceq09G0639, Ceq09G0646 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl03G1438, Cgl09G0682, Cgl09G0694 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g06900 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g27720 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-8764 |
| Nitrariaceae | Nitraria sibirica | 5 | evm.TU.LG05.1049, evm.TU.LG06.871, evm.TU.LG08.1197 ... |
| Plantaginaceae | Plantago ovata | 3 | Pov_00002104, Pov_00024361, Pov_00024386 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G15348, Lb2G15349 |
| Poaceae | Echinochloa crus-galli | 6 | AH03.2272, AH08.1876, BH03.2122, BH08.1968, CH03.2597 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_6AG0538420, gene-QOZ80_6BG0491650 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.5HG0488350.1, HORVU.MOREX.r3.7HG0696680.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_005915, gene-QYE76_031015 |
| Poaceae | Oryza coarctata | 4 | Oco15G012230, Oco16G010350, Oco17G007210, Oco18G007450 |
| Poaceae | Oryza sativa | 3 | LOC_Os08g37904.2, LOC_Os08g37920.1, LOC_Os09g29750.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_02G213300, gene-BS78_07G171300 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0403301, Pt_Chr0701732, Pt_Chr0701765 |
| Poaceae | Sporobolus alterniflorus | 10 | Chr0G015420, Chr10G008120, Chr14G015660, Chr16G016260 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel5E01G401100, Tel7E01G508800 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC5AG039080, gene_TRIDC5BG041450 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS5A02G250100.1, TraesCS5B02G248100.4 ... |
| Poaceae | Zea mays | 3 | Zm00001eb033590_P002, Zm00001eb101320_P001 ... |
| Poaceae | Zoysia japonica | 4 | nbis-gene-17289, nbis-gene-19587, nbis-gene-30544 ... |
| Poaceae | Zoysia macrostachya | 3 | Zma_g23167, Zma_g24275, Zma_g32716 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG04.1791, evm.TU.LG06.583, evm.TU.LG08.691 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc04g15800, gene.Posoc05g11330 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_2_RagTag.1545, evm.TU.Scaffold_8_RagTag.746 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-3984, nbisL1-mrna-9498 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-11521, nbisL1-mrna-11522, nbisL1-mrna-5777 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-18938, nbisL1-mrna-20479 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000009l.387, evm.TU.utg000018l.522 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00003415, Maker00005243 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-2819, nbisL1-mrna-2988 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-21865 |
| Salicaceae | Populus euphratica | 7 | populus_peu14602, populus_peu24571, populus_peu32261 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132598799, gene-LOC132627521 |
| Solanaceae | Solanum chilense | 4 | SOLCI000423700, SOLCI001701100, SOLCI004071900 ... |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107010408, gene-LOC107015775 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.5971_chr02_+ |
| Tamaricaceae | Tamarix chinensis | 2 | TC03G2798, TC10G0041 |
| Zosteraceae | Zostera marina | 1 | Zosma01g07380.v3.1 |