Basic Information
Locus ID:
Ag4G02742
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
peroxisome organization
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 309152808 | 309160203 | + | Ag4G02742 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.35 | 38,886.95 Da | 53.02 | 105.40 | 0.36 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G34630.1 | 0 | |
| RefSeq | XP_017237369.1 | PREDICTED: uncharacterized protein LOC108210550 isoform X1 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A162AF74 | TMEM135_C_rich domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_008735 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 20.915375 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 14.499815 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 15.754654 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 16.970457 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 16.735138 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 15.641146 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 13.61509 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 13.642493 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 11.848152 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 12.389549 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 13.052113 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 10.794045 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 12.423942 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 11.809573 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 7.345288 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 9.17262 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 9.722056 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 8.226201 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 6.184434 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 8.975477 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 9.174796 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 7.440887 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 8.566777 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 8.242148 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 8.784003 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 7.862273 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 8.097692 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 5.913357 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 8.218117 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 10.454557 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 3.906543 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 3.283404 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 31.068987 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 18.716988 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 30.085827 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 28.377789 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 5.757067 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 13.157283 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 6.481912 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 5.3991 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 5.966478 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 34.309753 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 20.199537 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 15.566114 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 18.703991 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 30.90329 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 17.646463 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 13.370801 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 12.733998 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 14.163153 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg22634 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_23324 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah023916 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g009120 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg29305, Sbi_jg3542 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg6419 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000874 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl11781, Sgl11939, Sgl17270 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000014917, gene:ENSEOMG00000035362 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0012190, CQ.Regalona.r1.1BG0014150 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30040920 |
| Apiaceae | Apium graveolens | 1 | Ag4G02742 |
| Arecaceae | Cocos nucifera | 3 | COCNU_03G006990, COCNU_03G007000, scaffold002246G000040 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103701762 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.1811.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri2G23577 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G34630.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10001817m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g29750.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g036200.2N, BniB04g052740.2N, BniB04g052760.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1346 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G1448 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g07500 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0292s00011.v1.0, Dusal.0292s00012.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g27810 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-12377, nbisL1-mrna-5229 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.1044 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G15340 |
| Poaceae | Echinochloa crus-galli | 4 | AH01.4699, CH01.3771, CH01.5273, Contig181.119 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_3AG0236840, gene-QOZ80_3AG0249930 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0406920.1 |
| Poaceae | Oryza coarctata | 2 | Oco05G005030, Oco06G005200 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g09090.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G314500, gene-BS78_01G452400 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0101432, Pt_Chr0101469, Pt_Chr0401371 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G026040, Chr04G002340, Chr07G008900, Chr12G013330 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G510200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG056060, gene_TRIDC4BG052220 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G406900.1, TraesCS4B02G306200.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb006880_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-2656, nbis-gene-6613 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g10178, Zma_g1898 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.1786, evm.TU.LG06.588 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g15570 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.997 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-18849 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-13927 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-6822 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000002l.757 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00010811 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-8215 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-9945 |
| Salicaceae | Populus euphratica | 2 | populus_peu32276, populus_peu32277 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132609701, gene-LOC132627510 |
| Solanaceae | Solanum chilense | 1 | SOLCI003725500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107015548 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.9739_chr06_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G2465 |
| Zosteraceae | Zostera marina | 1 | Zosma03g34060.v3.1 |