Basic Information
Locus ID:
Ag4G02735
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Transcription initiation factor TFIID subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 309044263 | 309069989 | + | Ag4G02735 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.62 | 211,245.95 Da | 51.71 | 74.51 | -0.79 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17064 | Ubl_TAFs_like | 669 | 740 | 2.7E-32 | - |
| CDD | cd04369 | Bromodomain | 1756 | 1851 | 1.0819E-24 | - |
| Pfam | PF00240 | Ubiquitin family | 671 | 741 | 3.8E-8 | IPR000626 |
| Pfam | PF15288 | Zinc knuckle | 1411 | 1432 | 4.8E-5 | IPR041670 |
| Pfam | PF00439 | Bromodomain | 1758 | 1834 | 5.5E-18 | IPR001487 |
| Pfam | PF09247 | TATA box-binding protein binding | 21 | 67 | 1.2E-9 | IPR009067 |
| Pfam | PF12157 | Protein of unknown function (DUF3591) | 586 | 1155 | 2.3E-145 | IPR022591 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 639 | 739 | 1.27E-13 | IPR029071 |
| SUPERFAMILY | SSF47370 | Bromodomain | 1738 | 1850 | 2.22E-25 | IPR036427 |
| SUPERFAMILY | SSF47055 | TAF(II)230 TBP-binding fragment | 26 | 64 | 1.29E-7 | IPR036741 |
| Gene3D | G3DSA:1.20.920.10 | - | 1718 | 1867 | 2.8E-25 | IPR036427 |
| Gene3D | G3DSA:3.10.20.90 | - | 664 | 741 | 6.6E-13 | - |
| Gene3D | G3DSA:1.10.1100.10 | - | 24 | 74 | 4.6E-5 | IPR036741 |
| SMART | SM00213 | ubq_7 | 669 | 741 | 4.4E-5 | IPR000626 |
| SMART | SM00297 | bromo_6 | 1746 | 1856 | 8.0E-21 | IPR001487 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 669 | 739 | 14.05523 | IPR000626 |
| ProSiteProfiles | PS50014 | Bromodomain profile. | 1766 | 1836 | 18.281 | IPR001487 |
| PRINTS | PR00503 | Bromodomain signature | 1817 | 1836 | 4.2E-10 | IPR001487 |
| PRINTS | PR00503 | Bromodomain signature | 1769 | 1782 | 4.2E-10 | IPR001487 |
| PRINTS | PR00503 | Bromodomain signature | 1799 | 1817 | 4.2E-10 | IPR001487 |
| PRINTS | PR00503 | Bromodomain signature | 1783 | 1799 | 4.2E-10 | IPR001487 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 30 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1425 | 1468 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1425 | 1448 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1303 | 1323 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 131 | 175 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1559 | 1598 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1614 | 1658 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1449 | 1466 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 471 | 493 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1678 | 1700 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 147 | 165 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 471 | 488 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1543 | 1598 | - | - |
| Coils | Coil | Coil | 1628 | 1662 | - | - |
| Coils | Coil | Coil | 1667 | 1696 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G32750.1 | HAC13 protein (HAC13). This gene is predicted to encode a histone acetyltransferase. Five lines with RNAi constructs directed against HAF1 grow normally and can produce root calli, but have defects in agrobacterium-mediated transformation. | 0 |
| RefSeq | XP_017241541.1 | PREDICTED: transcription initiation factor TFIID subunit 1 isoform X2 [Daucus carota subsp. sativus] | 0 |
| Q8LRK9 | Transcription initiation factor TFIID subunit 1 OS=Arabidopsis thaliana OX=3702 GN=TAF1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A162AEI3 | Transcription initiation factor TFIID subunit 1 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_008727 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 21.431017 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 17.709833 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 20.471674 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 22.826698 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 22.788952 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 23.416767 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 27.547419 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 28.396637 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 21.970448 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 20.64185 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 22.661985 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 27.916475 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 30.850098 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 22.599333 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 6.585984 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 7.673255 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 7.417208 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 12.410288 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 7.099096 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 12.22783 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 12.86069 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 9.159692 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 8.776132 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 7.603023 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 9.822092 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 12.402184 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 9.673902 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 9.277622 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 12.130131 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 4.067393 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 5.269287 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 2.957467 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 6.918456 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 5.551058 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 7.179311 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 4.139902 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 2.966219 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 3.476842 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 9.553268 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 7.546586 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 5.013209 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 10.044081 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 10.211612 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 12.439946 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 12.327446 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 8.82596 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 12.639072 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 11.716151 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 12.247922 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 11.338885 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg28518 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_2845 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah019571 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g058510 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg25942, Sbi_jg38517, Sbi_jg6622 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg15310 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00006407 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl01840, Sgl01841, Sgl06997, Sgl79237, Sgl81698 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000015267, gene:ENSEOMG00000032286 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0010850, CQ.Regalona.r1.3BG0011040 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30102830, pistato.v30261160 |
| Apiaceae | Apium graveolens | 2 | Ag4G02735, Ag7G00549 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G015820 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103718979, gene-LOC120107979, gene-LOC120108968 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.203.V1.1, AsparagusV1_03.226.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G12161 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G32750.1, AT3G19040.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10006532m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g28210.v2.2, Sp3g17140.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB07g016900.2N, BniB07g051470.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G0603 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G0641 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g10550 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0232s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g08610 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.776 |
| Plantaginaceae | Plantago ovata | 4 | Pov_00002129, Pov_00004518, Pov_00014480, Pov_00023629 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G04603 |
| Poaceae | Echinochloa crus-galli | 5 | AH05.3914, AH06.2445, BH06.2244, CH05.4145, CH06.2467 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0546340, gene-QOZ80_6BG0499700 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0744780.1 |
| Poaceae | Lolium multiflorum | 9 | gene-QYE76_007624, gene-QYE76_007626, gene-QYE76_007628 ... |
| Poaceae | Oryza coarctata | 2 | Oco11G013820, Oco12G014010 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g43790.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_02G113400, gene-BS78_10G207000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0401600 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr02G030870, Chr0G000050, Chr0G000060, Chr10G018960 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel7E01G892500, Tel7E01G892700 |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC7AG072320, gene_TRIDC7AG072340 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS7A02G514800.1, TraesCS7A02G515000.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb386900_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-40908 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g33140 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG06.1498, evm.TU.LG11.861 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g23010 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.510 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-4685 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-2061 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-9670 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.655 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00006140 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-2607 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-16587 |
| Salicaceae | Populus euphratica | 2 | populus_peu22749, populus_peu24171 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132602807 |
| Solanaceae | Solanum chilense | 1 | SOLCI000387400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107025862 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_12267, gene_9225 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G0552 |
| Zosteraceae | Zostera marina | 1 | Zosma03g31420.v3.1 |