Basic Information
Locus ID:
Ag4G02699
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 308384782 | 308387141 | - | Ag4G02699 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.48 | 37,282.16 Da | 36.14 | 88.92 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 74 | 109 | 0.16 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 29 | 65 | 3.8E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 117 | 151 | 0.085 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 25 | 328 | 7.5E-52 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 10 | 333 | 4.6E-68 | IPR015943 |
| SMART | SM00320 | WD40_4 | 25 | 65 | 2.3E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 112 | 151 | 0.0024 | IPR001680 |
| SMART | SM00320 | WD40_4 | 249 | 290 | 0.33 | IPR001680 |
| SMART | SM00320 | WD40_4 | 293 | 333 | 2.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 154 | 200 | 53.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 70 | 109 | 7.1E-4 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 32 | 65 | 9.915599 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 118 | 160 | 10.508451 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 32 | 65 | 11.878597 | IPR001680 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G54520.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_017238344.1 | PREDICTED: WD repeat-containing protein 25 [Daucus carota subsp. sativus] | 0 |
| Q64LD2 | WD repeat-containing protein 25 OS=Homo sapiens OX=9606 GN=WDR25 PE=1 SV=3 | 0 | |
| TrEMBL | A0A165ZER5 | WD_REPEATS_REGION domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_008699 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 17.550211 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 12.415112 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 14.729175 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 14.05484 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 14.207415 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 18.264292 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 16.999887 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 13.939161 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 9.279899 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 8.11003 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 7.892491 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 8.939935 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 8.640445 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 7.136191 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 2.653002 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 2.881127 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 2.138355 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 3.557946 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 2.195158 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 1.789834 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 3.911563 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 3.604102 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 2.673658 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 4.47189 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 3.878591 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 3.067765 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 1.659679 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 4.682341 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 2.345471 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 3.625977 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 2.631479 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 3.119866 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 6.117366 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 5.121839 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 4.117444 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 2.930615 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 2.718849 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 1.940423 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 6.154653 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 6.258741 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 4.229447 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 4.233263 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 6.713832 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 10.897122 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 12.586099 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 2.805985 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 13.926083 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 4.770028 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 4.881333 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 6.695187 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg21455, jg21456 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_7386 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah008421, Ah008422 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg18814, Sbi_jg37242, Sbi_jg37245 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg5065 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00007003 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl22945, Sgl28065 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000007803, gene:ENSEOMG00000042705 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0020960, CQ.Regalona.r1.4BG0021450 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30159840 |
| Apiaceae | Apium graveolens | 3 | Ag4G00888, Ag4G02699, Ag4G02709 |
| Arecaceae | Cocos nucifera | 1 | COCNU_07G002250 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103706162 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.2153.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G00410 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G54520.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10013494m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g16490.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g015890.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G1197 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G1342 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g10880 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g02310 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-9141 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.1730 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00008982 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G03279, Lb1G03280 |
| Poaceae | Echinochloa crus-galli | 4 | AH05.2174, AH05.2175, BH05.2333, CH05.2388 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0311820, gene-QOZ80_4BG0343130 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0105610.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_038383 |
| Poaceae | Oryza coarctata | 1 | Oco04G009250 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g21490.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G055700 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0305668, Pt_Ctg00124 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr30G014050 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G140400 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC2AG006810, gene_TRIDC2AG006830 ... |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G061500.1, TraesCS2B02G074700.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb118470_P001, Zm00001eb164250_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-8210 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g21000 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.1694, evm.TU.LG09.221 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc08g05770 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.265 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-21991 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-3222 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-7225 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.386 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00009604 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-6803 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-12611 |
| Salicaceae | Populus euphratica | 2 | populus_peu00409, populus_peu00410 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132613585 |
| Solanaceae | Solanum chilense | 1 | SOLCI002061300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107015944 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_13194 |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G2829 |
| Zosteraceae | Zostera marina | 1 | Zosma15g00170.v3.1 |