Basic Information
Locus ID:
Ag4G02697
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Short Name:
UBP14
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 308327940 | 308340060 | + | Ag4G02697 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.03 | 88,357.91 Da | 37.73 | 81.81 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14295 | UBA1_atUBP14 | 606 | 650 | 1.05821E-18 | - |
| CDD | cd02658 | Peptidase_C19B | 309 | 785 | 2.67311E-127 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 308 | 784 | 1.1E-40 | IPR001394 |
| Pfam | PF00627 | UBA/TS-N domain | 667 | 702 | 1.2E-9 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 605 | 642 | 6.6E-7 | IPR015940 |
| Pfam | PF17807 | Variant UBP zinc finger | 11 | 74 | 3.7E-22 | IPR041432 |
| Pfam | PF02148 | Zn-finger in ubiquitin-hydrolases and other protein | 180 | 253 | 2.0E-17 | IPR001607 |
| SUPERFAMILY | SSF46934 | UBA-like | 661 | 705 | 1.19E-11 | IPR009060 |
| SUPERFAMILY | SSF57850 | RING/U-box | 158 | 266 | 5.06E-34 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 304 | 787 | 2.55E-77 | IPR038765 |
| Gene3D | G3DSA:1.10.8.10 | - | 605 | 639 | 1.8E-8 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 301 | 788 | 1.1E-81 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 104 | 7.7E-33 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 144 | 253 | 2.1E-39 | IPR013083 |
| Gene3D | G3DSA:1.10.8.10 | - | 640 | 710 | 6.2E-24 | - |
| SMART | SM00290 | Zf_UBP_1 | 179 | 234 | 7.6E-24 | IPR001607 |
| SMART | SM00165 | uba_6 | 606 | 644 | 8.8E-6 | IPR015940 |
| SMART | SM00165 | uba_6 | 667 | 704 | 5.4E-11 | IPR015940 |
| PIRSF | PIRSF016308 | UBP | 2 | 788 | 1.2E-272 | IPR016652 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 604 | 645 | 10.715514 | IPR015940 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 308 | 787 | 42.406437 | IPR028889 |
| ProSiteProfiles | PS50271 | Zinc finger UBP-type profile. | 178 | 252 | 17.952953 | IPR001607 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 665 | 705 | 14.016817 | IPR015940 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 732 | 750 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 309 | 324 | - | IPR018200 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G20630.1 | ubiquitin-specific protease 14. Encodes a ubiquitin-specific protease. Identical to TTN6. Loss of function mutations are embryo lethals, having development arrested at the preglobular/globular stage. Also involved in root responses to phosphate deficiency. | 0 |
| RefSeq | XP_017242628.1 | PREDICTED: ubiquitin carboxyl-terminal hydrolase 14 isoform X1 [Daucus carota subsp. sativus] | 0 |
| Q8L6Y1 | Ubiquitin carboxyl-terminal hydrolase 14 OS=Arabidopsis thaliana OX=3702 GN=UBP14 PE=1 SV=1 | 0 | |
| TrEMBL | A0A165ZEK3 | Ubiquitin carboxyl-terminal hydrolase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_008692 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 28.047823 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 21.995758 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 18.272923 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 17.056545 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 19.706694 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 13.643166 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 15.03213 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 9.072591 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 51.585354 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 51.674183 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 56.090324 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 57.550175 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 51.565605 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 41.834667 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 16.467993 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 19.270998 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 23.307276 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 21.681019 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 17.122639 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 19.696026 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 22.530256 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 36.395779 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 39.82156 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 38.087009 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 32.726707 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 26.949203 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 24.412815 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 23.405643 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 27.350883 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 3.224675 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 6.144424 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 5.14654 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 9.773106 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 17.037832 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 7.763313 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 7.789721 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 2.851273 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 3.415948 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 25.611336 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 14.512712 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 8.202992 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 14.236006 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 20.170277 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 23.382586 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 19.599745 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 17.532993 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 23.367384 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 38.514084 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 46.509254 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 41.470211 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg38312 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_12397 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah008387 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg18793, Sbi_jg37227 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg5053 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00006986 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl22962, Sgl22969, Sgl28082 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000008745, gene:ENSEOMG00000031281 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0020820, CQ.Regalona.r1.4BG0021600 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30160200 |
| Apiaceae | Apium graveolens | 1 | Ag4G02697 |
| Arecaceae | Cocos nucifera | 2 | COCNU_12G004050, scaffold004260G000020 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103709890 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_06.267.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri7G32772 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G20630.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10020069m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g18670.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g043160.2N, BniB07g031450.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G1181 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G1323 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g11040 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0172s00020.v1.0, Dusal.0172s00021.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g16940 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2476 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.1709 |
| Plantaginaceae | Plantago ovata | 4 | Pov_00005221, Pov_00023321, Pov_00023323, Pov_00031516 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb2G11391, Lb7G35260, Lb7G35262 |
| Poaceae | Echinochloa crus-galli | 6 | AH02.445, AH04.361, BH02.471, BH02.55, CH02.515, CH02.63 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0011830, gene-QOZ80_1BG0060450 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0240180.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_050458 |
| Poaceae | Oryza coarctata | 2 | Oco01G003200, Oco02G003230 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g08200.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G042900 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0200300 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr03G005470, Chr08G005940, Chr08G005950 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G210700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG015320, gene_TRIDC3BG019870 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G122900.1, TraesCS3B02G142100.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb336890_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-13186, nbis-gene-6809 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g10060, Zma_g7714 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.2055, evm.TU.LG14.1234 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g24020 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.247 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-21970 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-13865 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-7238, nbisL1-mrna-7239 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.398 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00009382 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-6794 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-12590 |
| Salicaceae | Populus euphratica | 3 | populus_peu00439, populus_peu17506, populus_peu37691 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132620376 |
| Solanaceae | Solanum chilense | 1 | SOLCI003375900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026308 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.20660_chr08_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G0299 |
| Zosteraceae | Zostera marina | 1 | Zosma02g19560.v3.1 |