Basic Information
Locus ID:
Ag4G02685
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Short Name:
FIE
Description:
fertilization-independent endosperm
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 308153745 | 308161768 | + | Ag4G02685 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.93 | 41,562.05 Da | 42.67 | 87.66 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 172 | 204 | 4.1E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 123 | 158 | 0.091 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 27 | 367 | 3.85E-44 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 19 | 368 | 2.0E-93 | IPR015943 |
| SMART | SM00320 | WD40_4 | 80 | 115 | 110.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 118 | 158 | 0.009 | IPR001680 |
| SMART | SM00320 | WD40_4 | 325 | 366 | 0.013 | IPR001680 |
| SMART | SM00320 | WD40_4 | 161 | 204 | 6.9E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 279 | 320 | 45.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 230 | 267 | 86.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 125 | 167 | 10.14085 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 171 | 206 | 11.678087 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 171 | 206 | 9.757418 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 145 | 159 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 145 | 159 | 1.2E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 353 | 367 | 1.2E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 191 | 205 | 1.2E-5 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G20740.1 | Transducin/WD40 repeat-like superfamily protein. Encodes a protein similar to the transcriptional regular of the animal Polycomb group and is involved in regulation of establishment of anterior-posterior polar axis in the endosperm and repression of flowering during vegetative phase. Mutation leads endosperm to develop in the absence of fertilization and flowers to form in seedlings and non-reproductive organs. Also exhibits maternal effect gametophytic lethal phenotype, which is suppressed by hypomethylation. Forms part of a large protein complex that can include VRN2 (VERNALIZATION 2), VIN3 (VERNALIZATION INSENSITIVE 3) and polycomb group proteins FERTILIZATION INDEPENDENT ENDOSPERM (FIE), CURLY LEAF (CLF) and SWINGER (SWN or EZA1). The complex has a role in establishing FLC (FLOWERING LOCUS C) repression during vernalization. In the ovule, the FIE transcript levels increase transiently just after fertilization. | 0 |
| RefSeq | XP_017237558.1 | PREDICTED: polycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM isoform X1 [Daucus carota subsp. sativus] | 0 |
| Q6ZJX0 | Polycomb group protein FIE1 OS=Oryza sativa subsp. japonica OX=39947 GN=FIE2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A165ZE69 | WD_REPEATS_REGION domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_008679 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 19.120066 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 16.376284 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 17.476643 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 21.275589 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 19.28882 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 20.951197 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 17.956734 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 15.175825 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 37.327881 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 33.222599 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 36.887455 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 45.498306 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 38.433495 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 38.023823 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 15.06349 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 17.691786 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 15.905335 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 19.538889 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 18.589886 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 18.936319 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 21.493971 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 21.756706 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 24.884926 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 24.708679 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 25.463175 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 27.305246 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 21.719027 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 18.664627 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 21.236319 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 12.203539 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 15.481521 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 14.442075 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 27.441574 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 21.2374 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 24.810953 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 16.16206 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 13.252214 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 13.243593 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 22.955536 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 18.67584 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 12.779044 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 27.121429 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 33.96637 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 53.055279 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 53.088982 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 32.602409 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 39.387745 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 35.485832 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 33.199692 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 38.694923 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg21474 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_12347 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg18842, Sbi_jg37279 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg5097 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00007038 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl22862, Sgl23718, Sgl27980, Sgl28913 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009891, gene:ENSEOMG00000027073 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.4AG0021380, CQ.Regalona.r1.4AG0021390 ... |
| Apiaceae | Apium graveolens | 4 | Ag11G04800, Ag11G04801, Ag2G00494, Ag4G02685 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103699671 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.2610.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G24904 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G20740.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10020971m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g18760.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB01g042970.2N, BniB01g042990.2N, BniB07g050410.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G1236 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G1374 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g06690 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0318s00007.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g17290 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.1789 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00001644, Pov_00008915 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G02551, Lb5G26691 |
| Poaceae | Echinochloa crus-galli | 8 | AH01.966, AH08.265, AH08.722, BH01.1105, BH08.251, CH01.1152 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_8AG0616580, gene-QOZ80_8BG0644110 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0702190.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_033153 |
| Poaceae | Oryza coarctata | 3 | Oco15G001590, Oco16G001690, Oco16G001710 |
| Poaceae | Oryza sativa | 2 | LOC_Os08g04270.1, LOC_Os08g04290.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_07G035300, gene-BS78_08G028100, gene-BS78_K080200 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0402516, Pt_Chr0404331, Pt_Chr0404333 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr16G000880, Chr17G000840, Chr20G013120, Chr20G013360 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel7E01G187900, Tel7E01G518600 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC4AG058500, gene_TRIDC7AG010170 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS4A02G388400.1, TraesCS7A02G089100.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb173090_P001, Zm00001eb416950_P001 |
| Poaceae | Zoysia japonica | 4 | nbis-gene-39152, nbis-gene-41514, nbis-gene-51560 ... |
| Poaceae | Zoysia macrostachya | 2 | Zma_g18840, Zma_g23578 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.1659, evm.TU.LG09.257 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc08g08020 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.430 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-11036, nbisL1-mrna-11057 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-16495 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-10397 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000006l.471 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013525 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-13301 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-23580 |
| Salicaceae | Populus euphratica | 2 | populus_peu00379, populus_peu37315 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132617017, gene-LOC132618128, gene-LOC132635324 |
| Solanaceae | Solanum chilense | 1 | SOLCI000270500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107024120 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_298 |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G0927 |
| Zosteraceae | Zostera marina | 1 | Zosma05g17550.v3.1 |