Basic Information
Locus ID:
Ag4G02678
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 307909516 | 307910162 | - | Ag4G02678 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.20 | 21,812.72 Da | 29.11 | 94.30 | 0.06 |
Protein Domain:
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_017242749.1 | PREDICTED: WD repeat-containing protein 91 homolog isoform X2 [Daucus carota subsp. sativus] | 0 |
| Q55FJ2 | WD repeat-containing protein 91 homolog OS=Dictyostelium discoideum OX=44689 GN=wdr91 PE=3 SV=1 | 0 | |
| TrEMBL | A0A5B6Z0X9 | LisH domain-containing protein OS=Davidia involucrata OX=16924 GN=Din_006919 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 10.478335 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 8.00024 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 6.444283 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 6.735435 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 11.034033 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 8.06762 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 9.333397 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 4.889063 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 13.257112 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 12.644426 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 12.818373 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 11.989476 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 15.098114 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 10.06641 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 6.622909 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 9.870078 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 2.080255 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 7.85682 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 15.742686 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 7.165264 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 10.563246 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 5.493824 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 6.043049 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 10.206997 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 5.927683 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 11.326429 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 5.80441 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 10.976421 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 7.946245 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.837027 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 1.90402 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.673886 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 2.603573 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 0.978433 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 1.098769 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 1.070085 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.948363 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 6.997544 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 4.035858 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 3.434824 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 8.209418 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 9.541234 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 8.874378 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 9.610715 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 4.814634 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 8.219289 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 5.082414 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 4.375579 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 5.405952 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg2232 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_16180 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah018759 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g052910 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg15177, Sbi_jg56011 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg26488 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00019975 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl01479, Sgl06644 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000002901, gene:ENSEOMG00000030780 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.3AG0003970 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30202830 |
| Apiaceae | Apium graveolens | 2 | Ag4G02677, Ag4G02678 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103716260 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_10.1911.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G21309 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1519 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1620 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno12g02020 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g17190 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-11759, nbisL1-mrna-11760 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2821 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00010481 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb4G24609, Lb4G25164 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.1784, BH01.2108, CH01.2194 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0127660, gene-QOZ80_2BG0183140 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0042120.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_011413 |
| Poaceae | Oryza coarctata | 2 | Oco09G005670, Oco10G006310 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g23430.2 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G207600 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0502568 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr06G013030, Chr09G010930, Chr13G014270, Chr13G014300 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G280700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG023060, gene_TRIDC1BG027910 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G152000.5, TraesCS1B02G169400.5 ... |
| Poaceae | Zea mays | 1 | Zm00001eb221900_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-19236 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g16180 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc04g02760, gene.Posoc09g08210 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.62 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-29278 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-17811 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-2214, nbisL1-mrna-2215 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.35 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00001199 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-2316 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-6332 |
| Salicaceae | Populus euphratica | 1 | populus_peu28136 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132616635 |
| Solanaceae | Solanum chilense | 1 | SOLCI006434500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107007268 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_10793 |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G1520 |
| Zosteraceae | Zostera marina | 1 | Zosma05g13770.v3.1 |