Basic Information
Locus ID:
Ag4G02677
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 307903162 | 307909140 | - | Ag4G02677 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.22 | 44,144.04 Da | 44.59 | 74.55 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 375 | 407 | 0.0068 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 238 | 291 | 3.9E-5 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 90 | 123 | 3.5E-6 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 82 | 407 | 2.75E-44 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 31 | 211 | 1.3E-18 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 212 | 338 | 1.9E-16 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 339 | 411 | 9.4E-6 | IPR015943 |
| SMART | SM00320 | WD40_4 | 130 | 169 | 3.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 229 | 270 | 0.0011 | IPR001680 |
| SMART | SM00320 | WD40_4 | 371 | 409 | 1.8E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 85 | 124 | 1.8E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 273 | 316 | 8.6 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 377 | 411 | 10.775796 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 92 | 127 | 10.732868 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 92 | 133 | 13.783434 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 377 | 411 | 10.363778 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_017242750.1 | PREDICTED: WD repeat-containing protein 91 homolog isoform X3 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A5B7C3S6 | ANAPC4_WD40 domain-containing protein OS=Davidia involucrata OX=16924 GN=Din_043424 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 21.554047 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 17.053545 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 13.941209 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 15.325689 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 18.376705 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 15.37133 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 13.700873 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 9.965653 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 21.42004 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 22.294935 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 23.505707 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 22.558216 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 22.374332 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 21.702017 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 14.429498 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 19.532888 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 15.600021 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 14.543958 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 35.70969 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 12.16133 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 14.933096 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 19.209839 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 17.349125 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 24.920227 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 21.90822 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 20.164026 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 13.852345 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 17.79278 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 20.513941 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 5.62222 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 9.487851 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 6.797274 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 5.044552 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 7.484235 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 3.845512 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 4.445823 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 3.499165 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 3.871966 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 12.100728 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 8.61798 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 9.70268 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 14.400263 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 15.554632 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 15.835586 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 18.865128 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 15.246489 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 16.035967 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 34.152565 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 35.587437 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 30.448393 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg2232 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_16180 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah018759 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g052910 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg15177, Sbi_jg56011 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg26488 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00019975 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl01479, Sgl06644 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000002901, gene:ENSEOMG00000030780 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.3AG0003970 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30202830 |
| Apiaceae | Apium graveolens | 2 | Ag4G02677, Ag4G02678 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103716260 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_10.1911.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G21309 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1519 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1620 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno12g02020 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g17190 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-11759, nbisL1-mrna-11760 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2821 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00010481 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb4G24609, Lb4G25164 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.1784, BH01.2108, CH01.2194 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0127660, gene-QOZ80_2BG0183140 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0042120.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_011413 |
| Poaceae | Oryza coarctata | 2 | Oco09G005670, Oco10G006310 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g23430.2 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G207600 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0502568 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr06G013030, Chr09G010930, Chr13G014270, Chr13G014300 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G280700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG023060, gene_TRIDC1BG027910 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G152000.5, TraesCS1B02G169400.5 ... |
| Poaceae | Zea mays | 1 | Zm00001eb221900_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-19236 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g16180 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc04g02760, gene.Posoc09g08210 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.62 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-29278 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-17811 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-2214, nbisL1-mrna-2215 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.35 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00001199 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-2316 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-6332 |
| Salicaceae | Populus euphratica | 1 | populus_peu28136 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132616635 |
| Solanaceae | Solanum chilense | 1 | SOLCI006434500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107007268 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_10793 |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G1520 |
| Zosteraceae | Zostera marina | 1 | Zosma05g13770.v3.1 |