halophFGD

Basic Information

Locus ID: Ag4G02635

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr4	306793099	306796576	-	Ag4G02635

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.59	23,011.48 Da	40.02	68.61	-0.53

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd12420	RRM_RBPMS_like	110	192	7.44095E-36	-
Pfam	PF00076	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	112	182	5.9E-11	IPR000504
SUPERFAMILY	SSF54928	RNA-binding domain, RBD	93	205	3.63E-15	IPR035979
Gene3D	G3DSA:3.30.70.330	-	107	196	2.7E-19	IPR012677
SMART	SM00360	rrm1_1	111	188	1.1E-7	IPR000504
ProSiteProfiles	PS50102	Eukaryotic RNA Recognition Motif (RRM) profile.	110	196	11.588178	IPR000504

Gene Ontology

Molecular Function:

GO:0003676 (nucleic acid binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G21320.2	nucleotide binding;nucleic acid binding.
RefSeq	XP_017242940.1	PREDICTED: RNA-binding protein 1-like isoform X1 [Daucus carota subsp. sativus]
Swiss-Prot	Q8H0P8	RNA-binding protein 1 OS=Medicago truncatula OX=3880 GN=RBP1 PE=2 SV=1
TrEMBL	A0A165ZME1	RRM domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_008961 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	30.671951	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	25.295996	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	25.051262	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	18.785458	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	20.654417	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	23.789654	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	24.800924	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	23.412508	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	51.699993	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	48.756947	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	51.525887	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	49.440834	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	47.444477	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	48.273281	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	21.030642	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	21.554708	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	23.510498	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	26.398634	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	24.723841	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	27.115496	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	29.744129	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	29.217712	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	30.72558	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	36.579288	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	32.597797	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	25.868954	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	24.222683	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	26.090115	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	29.746374	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	39.24192		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	39.612381		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	39.314705		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	61.067318		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	44.366287		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	47.573208		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	38.005154		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	29.191391		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	40.487186		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	32.166862	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	17.253653	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	16.74021	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	36.259468	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	29.464148	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	43.636402	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	31.988424	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	39.578323	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	26.477709	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	50.024612	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	41.082275	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	40.532478	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg10275, jg13851, jg2158, jg4587
Aizoaceae	Mesembryanthemum crystallinum	3	gene_13150, gene_3336, gene_999
Amaranthaceae	Atriplex hortensis	3	Ah005333, Ah018564, Ah024364
Amaranthaceae	Beta vulgaris	3	BVRB_1g011240, BVRB_3g051310, BVRB_4g080290
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg15012, Sbi_jg17551, Sbi_jg38919, Sbi_jg54199 ... Sbi_jg55833, Sbi_jg62199
Amaranthaceae	Salicornia europaea	3	Seu_jg10782, Seu_jg26333, Seu_jg800
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00007429, GOSA_00017803, GOSA_00021044
Amaranthaceae	Suaeda glauca	8	Sgl01269, Sgl06353, Sgl10170, Sgl15278, Sgl15319, Sgl15373 ... Sgl24130, Sgl29313
Amaranthaceae	Chenopodium album	9	gene:ENSEOMG00000003277, gene:ENSEOMG00000007929 ... gene:ENSEOMG00000012665, gene:ENSEOMG00000029256, gene:ENSEOMG00000029591, gene:ENSEOMG00000033393, gene:ENSEOMG00000041872, gene:ENSEOMG00000045308, gene:ENSEOMG00000049533
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.1AG0014220, CQ.Regalona.r1.1BG0011830 ... CQ.Regalona.r1.3AG0005650, CQ.Regalona.r1.3BG0005750, CQ.Regalona.r1.4AG0004360, CQ.Regalona.r1.4BG0004490
Anacardiaceae	Pistacia vera	3	pistato.v30038060, pistato.v30165310, pistato.v30261260
Apiaceae	Apium graveolens	4	Ag10G02498, Ag3G01128, Ag4G02635, Ag9G02592
Arecaceae	Cocos nucifera	4	COCNU_02G000950, COCNU_07G006760, COCNU_08G006600 ... COCNU_10G004940
Arecaceae	Phoenix dactylifera	5	gene-LOC103707719, gene-LOC103709601, gene-LOC103716719 ... gene-LOC103718657, gene-LOC113463554
Asparagaceae	Asparagus officinalis	3	AsparagusV1_04.756.V1.1, AsparagusV1_08.418.V1.1 ... AsparagusV1_08.532.V1.1
Asteraceae	Flaveria trinervia	4	Ftri16G31281, Ftri4G20935, Ftri8G16409, Ftri8G28906
Brassicaceae	Arabidopsis thaliana	2	AT1G21320.1, AT1G76940.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10008603m.g.v1.0, Thhalv10019060m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp1g18870.v2.2, Sp5g32060.v2.2
Brassicaceae	Brassica nigra	6	BniB03g009090.2N, BniB03g009110.2N, BniB03g009140.2N ... BniB03g029590.2N, BniB03g056020.2N, BniB04g035900.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq03G1956, Ceq03G1957
Casuarinaceae	Casuarina glauca	3	Cgl03G2102, Cgl03G2104, Cgl09G1785
Cymodoceaceae	Cymodocea nodosa	4	gene.Cymno01g12730, gene.Cymno06g02540, gene.Cymno09g02230 ... gene.Cymno11g08950
Dunaliellaceae	Dunaliella salina	1	Dusal.0053s00027.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate05g01860, gene.Thate06g15790, gene.Thate08g17870
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG05.1213, evm.TU.LG06.730, evm.TU.LG07.657
Plantaginaceae	Plantago ovata	3	Pov_00013457, Pov_00022997, Pov_00041184
Plumbaginaceae	Limonium bicolor	2	Lb2G12756, Lb3G21045
Poaceae	Echinochloa crus-galli	11	AH06.246, AH06.470, AH08.2287, BH06.148, BH06.162, BH06.351 ... BH08.2428, CH06.143, CH06.342, CH08.2626, CH08.2627
Poaceae	Eleusine coracana subsp. coracana	7	gene-QOZ80_6AG0506880, gene-QOZ80_6AG0508760 ... gene-QOZ80_6AG0528800, gene-QOZ80_6BG0458560, gene-QOZ80_6BG0460920, gene-QOZ80_8AG0639740, gene-QOZ80_8BG0668350
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.7HG0642770.1, HORVU.MOREX.r3.7HG0650310.1 ... HORVU.MOREX.r3.7HG0687080.2
Poaceae	Lolium multiflorum	4	gene-QYE76_027559, gene-QYE76_027870, gene-QYE76_030513 ... gene-QYE76_030528
Poaceae	Oryza coarctata	8	Oco11G002260, Oco12G001130, Oco12G002250, Oco15G014040 ... Oco16G013230, Oco17G009960, Oco18G009960, Oco18G009980
Poaceae	Oryza sativa	5	LOC_Os06g03690.2, LOC_Os06g05530.1, LOC_Os08g43360.1 ... LOC_Os09g35830.4, LOC_Os09g35850.1
Poaceae	Paspalum vaginatum	3	gene-BS78_07G217800, gene-BS78_10G019600 ... gene-BS78_10G041500
Poaceae	Puccinellia tenuiflora	5	Pt_Chr0401910, Pt_Chr0401931, Pt_Chr0402216, Pt_Chr0403459 ... Pt_Chr0403476
Poaceae	Sporobolus alterniflorus	9	Chr0G015670, Chr11G022980, Chr11G024080, Chr14G001760 ... Chr16G018710, Chr17G017740, Chr20G002680, Chr21G000880, Chr29G000830
Poaceae	Thinopyrum elongatum	3	Tel7E01G124800, Tel7E01G199600, Tel7E01G472700
Poaceae	Triticum dicoccoides	6	gene_TRIDC4AG057500, gene_TRIDC4AG063820 ... gene_TRIDC7AG006100, gene_TRIDC7AG011410, gene_TRIDC7AG035480, gene_TRIDC7BG026620
Poaceae	Triticum aestivum	9	TraesCS4A02G396800.2, TraesCS4A02G432400.2 ... TraesCS7A02G057900.1, TraesCS7A02G096900.1, TraesCS7A02G270300.1, TraesCS7B02G168600.1, TraesCS7D02G053000.1, TraesCS7D02G093000.1, TraesCS7D02G270800.1
Poaceae	Zea mays	2	Zm00001eb202590_P001, Zm00001eb378600_P001
Poaceae	Zoysia japonica	4	nbis-gene-17594, nbis-gene-40401, nbis-gene-42802 ... nbis-gene-51176
Poaceae	Zoysia macrostachya	4	Zma_g23382, Zma_g24483, Zma_g29103, Zma_g31264
Portulacaceae	Portulaca oleracea	6	evm.TU.LG01.1590, evm.TU.LG01.498, evm.TU.LG04.1383 ... evm.TU.LG04.262, evm.TU.LG05.1904, evm.TU.LG14.838
Posidoniaceae	Posidonia oceanica	3	gene.Posoc03g23730, gene.Posoc06g11200, gene.Posoc08g01580
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_2_RagTag.1627, evm.TU.Scaffold_7_RagTag.1213 ... evm.TU.Scaffold_8_RagTag.546
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-18623, nbisL1-mrna-25879, nbisL1-mrna-3585 ... nbisL1-mrna-9715
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-1088, nbisL1-mrna-11280, nbisL1-mrna-13023
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-13189, nbisL1-mrna-19014
Rhizophoraceae	Kandelia candel	4	evm.TU.utg000002l.369, evm.TU.utg000008l.713 ... evm.TU.utg000009l.329, evm.TU.utg000018l.647
Rhizophoraceae	Kandelia obovata	3	Maker00002909, Maker00005740, Maker00011790
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-2759, nbisL1-mrna-8933, nbisL1-mrna-9641
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-18417, nbisL1-mrna-18632, nbisL1-mrna-21783
Salicaceae	Populus euphratica	5	populus_peu12617, populus_peu27985, populus_peu29433 ... populus_peu32536, populus_peu37057
Solanaceae	Lycium barbarum	3	gene-LOC132627289, gene-LOC132632124, gene-LOC132639733
Solanaceae	Solanum chilense	4	SOLCI003147000, SOLCI003530900, SOLCI003531000 ... SOLCI005051100
Solanaceae	Solanum pennellii	10	gene-LOC107012415, gene-LOC107015693, gene-LOC107016977 ... gene-LOC107021897, gene-LOC107021898, gene-LOC107021899, gene-LOC107021901, gene-LOC107022889, gene-LOC107023787, gene-LOC114073857
Tamaricaceae	Reaumuria soongarica	4	STRG.8119_chr05_-, STRG.8149_chr05_+, gene_10768, gene_5058
Tamaricaceae	Tamarix chinensis	3	TC06G2670, TC08G1317, TC11G1401
Zosteraceae	Zostera marina	2	Zosma05g24870.v3.1, Zosma05g33850.v3.1