Basic Information
Locus ID:
Ag4G02613
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Transducin WD40 repeat-like superfamily protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 305834259 | 305844167 | + | Ag4G02613 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.08 | 101,211.86 Da | 52.34 | 85.78 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 464 | 493 | 0.15 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 343 | 386 | 3.1E-4 | IPR001680 |
| Pfam | PF12657 | Transcription factor IIIC subunit delta N-term | 14 | 163 | 4.2E-16 | IPR024761 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 305 | 539 | 3.36E-22 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 13 | 119 | 8.55E-5 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 233 | 414 | 1.4E-11 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 415 | 549 | 2.3E-8 | IPR015943 |
| SMART | SM00320 | WD40_4 | 452 | 494 | 0.11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 341 | 387 | 6.3E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 3 | 40 | 270.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 70 | 118 | 0.98 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 462 | 503 | 8.703868 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 348 | 396 | 9.271977 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 165 | 188 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 165 | 180 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G49400.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_017243117.1 | PREDICTED: uncharacterized protein LOC108215228 isoform X1 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A165ZMV6 | TFIIIC_delta domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_008979 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 7.507299 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 5.035679 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 3.890589 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 4.431429 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 4.192788 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 4.764703 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 3.104704 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 4.505424 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 7.718349 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 7.107171 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 8.186304 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 7.433094 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 8.004024 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 6.736265 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 1.462081 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 1.556215 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 1.196565 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 1.763298 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 1.607056 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 1.556253 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 1.34815 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 2.249181 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 1.865403 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 2.305345 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 2.11341 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 2.450271 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 1.315247 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 1.55763 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 2.37987 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.88364 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.692701 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.928362 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 3.069226 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 3.053487 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 2.471695 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 1.590695 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.047307 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.991002 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 4.184789 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 1.762713 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 1.498405 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 1.209938 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 1.400442 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 2.625091 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 2.592496 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 1.453945 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 2.228979 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 8.101437 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 7.289293 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 6.502233 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg2131 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_3362 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah018510, Ah033723 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg14966, Sbi_jg55784 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg26292 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017840 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl01223, Sgl06301, Sgl06308 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000002917, gene:ENSEOMG00000045730 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0006040, CQ.Regalona.r1.3BG0006170 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30165550 |
| Apiaceae | Apium graveolens | 1 | Ag4G02613 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G016380 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103720062 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.3036.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G28369 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G49400.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10010115m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g12670.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g048260.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1675 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1809 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno12g03940 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0082s00020.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate05g28360, gene.Thate05g28370, gene.Thate07g18610 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.1261 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00011081 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb4G24114, Lb4G24115 |
| Poaceae | Echinochloa crus-galli | 4 | AH01.1336, AH02.2879, BH02.2966, CH02.3568 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_1BG0080170 |
| Poaceae | Hordeum vulgare | 4 | HORVU.MOREX.r3.3HG0283140.1, HORVU.MOREX.r3.3HG0283190.1 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_054781, gene-QYE76_067111 |
| Poaceae | Oryza coarctata | 2 | Oco01G018260, Oco02G018490 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g50690.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G127700 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0102988, Pt_Chr0106707, Pt_Chr0302309 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G013550, Chr03G014300, Chr05G021790, Chr08G014560 |
| Poaceae | Thinopyrum elongatum | 6 | Tel3E01G428500, Tel5E01G056200, Tel5E01G056300 ... |
| Poaceae | Triticum dicoccoides | 7 | gene_TRIDC3AG038200, gene_TRIDC3BG042950 ... |
| Poaceae | Triticum aestivum | 8 | TraesCS3A02G254800.1, TraesCS3B02G286800.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb062490_P003, Zm00001eb211870_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-26233, nbis-gene-26234 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g10965 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.1372, evm.TU.LG09.598 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g16470 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.1074 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-6533 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-12584 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21134 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000016l.867 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00016263 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-11052 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-13282 |
| Salicaceae | Populus euphratica | 1 | populus_peu29410 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132603565 |
| Solanaceae | Solanum chilense | 1 | SOLCI002704900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107021328 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_3973 |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G1250 |
| Zosteraceae | Zostera marina | 1 | Zosma05g12380.v3.1 |