Basic Information
Locus ID:
Ag4G02611
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 305797367 | 305797651 | - | Ag4G02611 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.76 | 10,519.86 Da | 53.20 | 72.55 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G32928.1 | 0 | |
| RefSeq | XP_017256910.1 | PREDICTED: uncharacterized protein LOC108226458 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A165ZMY7 | Secreted protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_008982 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 1.618205 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 1.210772 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 5.107502 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 4.271896 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 3.39109 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 17.606695 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 7.343081 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 4.819407 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 186.588623 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 186.603882 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 128.435638 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 62.708813 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 66.267326 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 10.588845 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 312.530701 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 434.589294 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 12.547902 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 282.306183 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 585.027832 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 511.491882 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 247.189148 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 184.008865 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 199.968872 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 274.504608 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 372.326385 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 22.212269 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 4.029685 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 43.55777 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 6.67063 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 2.857167 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 1.586864 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 2.945774 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 63.625134 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 60.274605 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 107.851074 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 12.625813 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 4.805237 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 16.922586 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 1.716671 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 6.461754 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 6.281545 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 495.74527 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 732.352173 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 233.954605 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 112.915695 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 580.283203 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 259.716431 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 501.678406 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 11.609789 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 13.692179 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg2117, jg2123, jg2129, jg3702 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah018506 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg25601 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg26290 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017844 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl01218, Sgl01219, Sgl06304 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0006070, CQ.Regalona.r1.3BG0006200 |
| Apiaceae | Apium graveolens | 2 | Ag10G02479, Ag4G02611 |
| Arecaceae | Cocos nucifera | 4 | COCNU_07G001830, COCNU_10G001290, COCNU_10G001300 ... |
| Asteraceae | Flaveria trinervia | 4 | Ftri14G10312, Ftri4G32310, Ftri7G04480, Ftri7G22626 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT1G32920.1, AT1G32928.1, AT5G54165.1 |
| Brassicaceae | Eutrema salsugineum | 5 | Thhalv10009230m.g.v1.0, Thhalv10009241m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 4 | Sp1g28080.v2.2, Sp6g06920.v2.2, Sp6g06940.v2.2 ... |
| Brassicaceae | Brassica nigra | 5 | BniB04g049620.2N, BniB04g049630.2N, BniB07g017180.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G0665 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno10g04750 |
| Plantaginaceae | Plantago ovata | 5 | Pov_00003078, Pov_00011002, Pov_00011087, Pov_00011217 ... |
| Poaceae | Echinochloa crus-galli | 8 | AH06.127, AH06.128, AH09.119, BH06.215, BH09.195, CH06.201 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_6AG0507510, gene-QOZ80_6AG0507520 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0096580.1 ... |
| Poaceae | Oryza coarctata | 2 | Oco07G000720, Oco08G000610 |
| Poaceae | Oryza sativa | 3 | LOC_Os04g02880.1, LOC_Os06g04230.1, LOC_Os06g04240.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_06G015000, gene-BS78_10G025100 ... |
| Poaceae | Sporobolus alterniflorus | 4 | Chr11G023700, Chr14G001220, Chr21G000310, Chr25G016220 |
| Poaceae | Thinopyrum elongatum | 6 | Tel2E01G033700, Tel3E01G137600, Tel7E01G155800 ... |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG000970, gene_TRIDC2BG000850 ... |
| Poaceae | Triticum aestivum | 28 | TraesCS1A02G381400.1.cds1, TraesCS1B02G403900.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb378110_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-40329, nbis-gene-40330, nbis-gene-53834 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g29050, Zma_g29051, Zma_g31295 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG02.1376, evm.TU.LG09.593, evm.TU.LG09.594 |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc04g21440, gene.Posoc06g08740, gene.Posoc06g09270 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-4205 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-8698 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000007l.190 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00018680 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-10526 |
| Salicaceae | Populus euphratica | 4 | populus_peu00217, populus_peu00218, populus_peu17234 ... |
| Solanaceae | Lycium barbarum | 4 | gene-LOC132632162, gene-LOC132632163, gene-LOC132634086 ... |
| Solanaceae | Solanum chilense | 3 | SOLCI000935600, SOLCI003489800, SOLCI005220900 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107013841, gene-LOC107013844, gene-LOC107014669 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.13453_chr07_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G1253 |
| Zosteraceae | Zostera marina | 1 | Zosma05g31370.v3.1 |