Basic Information
Locus ID:
Ag4G02513
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
IMPACT family member in pol
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 301981750 | 301985620 | + | Ag4G02513 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.12 | 27,953.58 Da | 44.41 | 79.56 | -0.28 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38090.1 | Ribosomal protein S5 domain 2-like superfamily protein. | 0 |
| RefSeq | XP_017242331.1 | PREDICTED: IMPACT family member in pol 5'region isoform X2 [Daucus carota subsp. sativus] | 0 |
| P32438 | IMPACT family member in pol 5'region (Fragment) OS=Thermus thermophilus OX=274 PE=3 SV=1 | 0 | |
| TrEMBL | A0A8X8WVI4 | Uncharacterized protein OS=Salvia splendens OX=180675 GN=SASPL_138011 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 5.66992 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 9.538666 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 4.914964 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 4.313437 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 6.144947 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 6.606366 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 5.061621 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 4.786575 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 4.696273 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 2.872125 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 4.324001 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 5.697797 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 4.602249 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 4.675857 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 3.288643 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 3.950512 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 4.142672 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 5.965623 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 2.543351 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 5.223492 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 5.736552 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 5.316168 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 5.881998 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 6.736374 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 4.734721 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 4.873436 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 4.08002 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 2.313094 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 4.466284 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 4.766166 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 5.676312 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 3.020734 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 6.152896 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 6.2299 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 6.80842 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 2.810264 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.574293 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 1.404546 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 5.546543 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 5.404842 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 5.509126 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 4.175048 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 3.093404 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 3.771859 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 4.173086 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 7.557293 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 5.175626 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 13.791249 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 11.361443 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 12.477734 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg20050, jg6798 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_16883 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027180 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g133590 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg12554, Sbi_jg12555, Sbi_jg12556, Sbi_jg53384 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg8536, Seu_jg8547 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00010463 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl33702, Sgl39013 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000003016, gene:ENSEOMG00000003384 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.6AG0022800 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30203690 |
| Apiaceae | Apium graveolens | 1 | Ag4G02513 |
| Arecaceae | Cocos nucifera | 1 | COCNU_05G005090 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103695633, gene-LOC120107559 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.2324.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G15936 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G38090.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10026114m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g10120.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g006010.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G0068 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G0063 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g09430 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0693s00005.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g16540 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2175 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2710 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb5G27908 |
| Poaceae | Echinochloa crus-galli | 3 | AH08.1836, BH08.1916, CH08.2101 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_8AG0634520, gene-QOZ80_8BG0663470 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0197890.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_031113 |
| Poaceae | Oryza coarctata | 2 | Oco15G012620, Oco16G009980 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g37310.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G167000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0403279 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr16G015870, Chr17G015280 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G796300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG066760, gene_TRIDC2BG071910 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G472000.1, TraesCS2B02G494700.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb038350_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-47693 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g23141 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.1458, evm.TU.LG12.125 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g22510 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.1707 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-17462 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-16442 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-12062 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000011l.1036 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00007107 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-15391 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-3382 |
| Salicaceae | Populus euphratica | 1 | populus_peu23719 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132614847 |
| Solanaceae | Solanum chilense | 1 | SOLCI006242200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107003375 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_3478 |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G0681 |
| Zosteraceae | Zostera marina | 1 | Zosma01g29400.v3.1 |