Basic Information
Locus ID:
Ag4G02491
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Cyclin-dependent kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 301093094 | 301094598 | - | Ag4G02491 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.77 | 30,201.89 Da | 45.30 | 34.76 | -1.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 6 | 96 | 1.66E-14 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 2 | 128 | 1.7E-24 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 103 | 149 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 171 | 273 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 103 | 130 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 245 | 273 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 134 | 149 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G10270.1 | cyclin-dependent kinase C;1. Encodes CDKC;1, part of a CDKC kinase complex that is targeted by Cauliflower mosaic virus (CaMV) for transcriptional activation of viral genes. Also regulates plant growth and development. | 0 |
| RefSeq | XP_052196226.1 | cyclin-dependent kinase C-1 [Diospyros lotus] | 0 |
| Q9LFT8 | Cyclin-dependent kinase C-1 OS=Arabidopsis thaliana OX=3702 GN=CDKC-1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5B7AZZ6 | Putative cyclin-dependent kinase C-1-like OS=Davidia involucrata OX=16924 GN=Din_031630 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 77.402596 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 65.993217 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 59.593647 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 54.002209 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 59.801079 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 70.709038 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 58.262241 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 56.882439 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 103.018127 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 103.816292 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 105.092499 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 119.251892 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 109.395409 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 104.376305 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 46.29586 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 44.40868 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 48.182877 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 53.613132 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 50.794922 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 45.906071 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 50.152527 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 61.914841 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 68.782433 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 68.058121 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 79.992409 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 56.054245 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 62.302979 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 54.932026 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 57.972534 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 69.913681 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 63.330208 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 61.563694 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 78.949348 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 84.049423 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 65.88459 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 73.819153 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 53.676662 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 62.333794 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 57.797367 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 42.518955 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 37.949146 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 57.90506 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 67.218254 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 91.937325 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 82.11158 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 66.303711 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 70.696899 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 102.419174 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 117.782448 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 86.645668 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg37669, jg39514 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_10159, gene_16470 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah014861, Ah027336 |
| Amaranthaceae | Beta vulgaris | 4 | BVRB_4g074410, BVRB_6g135070, BVRB_6g142360, BVRB_8g192040 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg17377, Sbi_jg24813, Sbi_jg8680 |
| Amaranthaceae | Salicornia europaea | 3 | Seu_jg19928, Seu_jg642, Seu_jg8704 |
| Amaranthaceae | Suaeda aralocaspica | 4 | GOSA_00010309, GOSA_00015530, GOSA_00015531, GOSA_00022245 |
| Amaranthaceae | Suaeda glauca | 9 | Sgl24294, Sgl24295, Sgl29470, Sgl29471, Sgl33838, Sgl39201 ... |
| Amaranthaceae | Chenopodium album | 10 | gene:ENSEOMG00000001346, gene:ENSEOMG00000001644 ... |
| Amaranthaceae | Chenopodium quinoa | 6 | CQ.Regalona.r1.4AG0002730, CQ.Regalona.r1.4BG0002840 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30054790, pistato.v30196430 |
| Apiaceae | Apium graveolens | 3 | Ag3G01696, Ag4G02491, Ag4G02492 |
| Arecaceae | Cocos nucifera | 2 | scaffold002056G000060, scaffold003404G000010 |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103707911, gene-LOC103716119, gene-LOC120103653 ... |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.1806.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri18G15438, Ftri1G22371 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT5G10270.1, AT5G64960.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10004018m.g.v1.0, Thhalv10013327m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp2g28040.v2.2, Sp2g28050.v2.2, Sp6g33160.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g051650.2N, BniB04g001080.2N, BniB07g048240.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1737 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1798 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g07530 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0296s00007.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g05920 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.655 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00026660, Pov_00031670 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G02533, Lb7G33473 |
| Poaceae | Echinochloa crus-galli | 9 | AH02.4573, AH05.2613, AH08.1754, BH02.4630, BH05.2695 ... |
| Poaceae | Eleusine coracana subsp. coracana | 5 | gene-QOZ80_1AG0047210, gene-QOZ80_1BG0097070 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0058450.1, HORVU.MOREX.r3.3HG0323020.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_013578, gene-QYE76_058309, gene-QYE76_072065 |
| Poaceae | Oryza coarctata | 5 | Oco01G030330, Oco02G031490, Oco09G008650, Oco15G013380 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os01g72790.1, LOC_Os05g32360.1, LOC_Os08g35220.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_03G407900, gene-BS78_07G156200 ... |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0505111, Pt_Chr0505450, Pt_Chr0605828 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr03G023700, Chr08G018080, Chr16G014700, Chr17G014090 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G403500, Tel3E01G819200 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG036670, gene_TRIDC1BG041670 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G243300.1, TraesCS1B02G254800.1 ... |
| Poaceae | Zea mays | 6 | Zm00001eb040540_P002, Zm00001eb055820_P002 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-10785 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g23088, Zma_g9414 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG06.683, evm.TU.LG11.139 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g15540 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_7_RagTag.1679, evm.TU.Scaffold_8_RagTag.120 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-10232, nbisL1-mrna-19843 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-6393 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-13604 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000002l.56, evm.TU.utg000018l.909 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-13258, nbisL1-mrna-3099 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-12369 |
| Salicaceae | Populus euphratica | 2 | populus_peu10723, populus_peu29507 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132603488, gene-LOC132615901 |
| Solanaceae | Solanum chilense | 2 | SOLCI002704400, SOLCI003405100 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107015644, gene-LOC107023523 |
| Tamaricaceae | Reaumuria soongarica | 3 | STRG.27998_chr04_+, gene_15016, gene_2879 |
| Tamaricaceae | Tamarix chinensis | 3 | TC01G4495, TC02G2966, TC11G0802 |
| Zosteraceae | Zostera marina | 2 | Zosma03g34030.v3.1, Zosma06g04430.v3.1 |