Basic Information
Locus ID:
Ag4G02488
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 301068581 | 301071648 | - | Ag4G02488 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.17 | 70,738.89 Da | 50.19 | 87.31 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03000 | NPH3 family | 217 | 485 | 2.2E-90 | IPR027356 |
| SUPERFAMILY | SSF54695 | POZ domain | 47 | 144 | 1.57E-14 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 50 | 148 | 2.9E-9 | IPR011333 |
| SMART | SM00225 | BTB_4 | 58 | 157 | 4.3E-4 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 58 | 127 | 9.661539 | IPR000210 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 216 | 509 | 84.644249 | IPR027356 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 597 | 624 | - | - |
| Coils | Coil | Coil | 539 | 573 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G10250.2 | - | 0 |
| RefSeq | XP_017242797.1 | PREDICTED: BTB/POZ domain-containing protein DOT3 isoform X1 [Daucus carota subsp. sativus] | 0 |
| Q9LFU0 | BTB/POZ domain-containing protein DOT3 OS=Arabidopsis thaliana OX=3702 GN=DOT3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A166AJ25 | NPH3 domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_010086 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 1.524454 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0.505373 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 1.35073 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 1.606338 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 1.501786 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.432553 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.668402 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.26907 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 3.366005 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 2.708452 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 3.078901 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 2.467839 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 3.574596 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 4.635151 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 15.356235 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 9.700042 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 11.673032 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 3.62958 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 6.054782 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 1.901073 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 5.552819 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0.389297 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0.401191 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0.785648 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0.319999 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 3.017687 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 3.118904 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 5.28051 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 10.336373 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 12.438709 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 30.916374 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 22.057812 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 3.082872 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 1.5673 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 4.708155 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 3.875591 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 4.409613 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 3.663898 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 16.401566 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 20.455355 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 9.62073 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.304646 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.344858 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0.613394 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.863101 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.112608 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 1.229677 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 0.322306 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 0.277613 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 0.109801 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg39509 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_16468 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027331 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_6g135110, BVRB_7g173420 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000003068 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0024260, CQ.Regalona.r1.6BG0025600 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30196480 |
| Apiaceae | Apium graveolens | 1 | Ag4G02488 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G32585 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G10250.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10015906m.g.v1.0 |
| Brassicaceae | Brassica nigra | 1 | BniB02g051670.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1741 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1802 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.659 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00020972 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG01.2447, evm.TU.LG06.688, evm.TU.LG11.129 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.1066 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-935 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-11482 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-2328 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.604 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00002295 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-6114 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-1758 |
| Salicaceae | Populus euphratica | 3 | populus_peu13771, populus_peu13772, populus_peu22928 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132640517 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107020457 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_16296 |