Basic Information
Locus ID:
Ag4G02449
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
SKP1-interacting partner
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 299796086 | 299797514 | + | Ag4G02449 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.54 | 45,694.08 Da | 52.72 | 86.78 | -0.12 |
Protein Domain:
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G76920.1 | F-box family protein. | 0 |
| RefSeq | XP_017238402.1 | PREDICTED: SKP1-interacting partner 15 [Daucus carota subsp. sativus] | 0 |
| O49279 | SKP1-interacting partner 15 OS=Arabidopsis thaliana OX=3702 GN=SKIP15 PE=1 SV=1 | 0 | |
| TrEMBL | A0A166AJ84 | F-box domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_010096 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 11.526691 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 13.314153 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 14.023921 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 13.85455 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 12.077493 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 15.200902 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 12.880833 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 9.615093 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 26.561413 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 29.512789 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 28.758263 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 25.658224 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 25.103258 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 25.504383 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 25.496595 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 26.859289 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 25.674002 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 19.726883 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 15.990623 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 22.362198 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 26.823605 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 31.203514 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 28.263865 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 30.916262 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 24.890499 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 18.722622 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 18.9475 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 16.47061 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 24.702713 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 15.746221 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 16.115786 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 16.072994 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 66.624908 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 28.697748 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 92.426552 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 35.846981 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 27.454758 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 29.22756 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 19.668104 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 19.790062 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 11.06582 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 38.406467 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 37.140705 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 42.80582 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 38.70932 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 36.998055 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 30.759003 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 16.106775 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 14.817555 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 11.946226 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg11983, jg23073, jg6394 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_22876 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah028920 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g176460 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg26982, Sbi_jg33567 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8276 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00002943 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl73279, Sgl76800 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000036283, gene:ENSEOMG00000038314 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.7AG0000610, CQ.Regalona.r1.9BG0005190 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30038020 |
| Apiaceae | Apium graveolens | 1 | Ag4G02449 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G018810, COCNU_11G000400 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103704347, gene-LOC103710148, gene-LOC120105092 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_09.148.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri10G17926 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G76920.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10019824m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | SpUn0346_0010.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g056000.2N, BniB05g073340.2N, BniB06g049360.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1960 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2107 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g01060 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g18820 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.723 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00036896 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb8G35770 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.2789, BH09.3022, CH09.3188 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0298600, gene-QOZ80_4BG0329300 |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.2HG0214830.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_011104, gene-QYE76_047665 |
| Poaceae | Oryza coarctata | 2 | Oco07G019850, Oco08G019130 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g59010.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G292400 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr23G000360, Chr25G000300, Chr26G018830, Chr30G000040 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G996200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG080120, gene_TRIDC2BG088240 |
| Poaceae | Triticum aestivum | 4 | TraesCS2A02G577100.1.cds1, TraesCS2B02G610300.1.cds1 ... |
| Poaceae | Zea mays | 9 | Zm00001eb076050_P002, Zm00001eb080980_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-23253, nbis-gene-6254 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g20731, Zma_g22279 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.687, evm.TU.LG26.340 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g21030 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.1216 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-18617 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-10445, nbisL1-mrna-1085 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-13192 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000002l.141 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00011756 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-20299 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-18420, nbisL1-mrna-18634 |
| Salicaceae | Populus euphratica | 2 | populus_peu14866, populus_peu32540 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132627295 |
| Solanaceae | Solanum chilense | 1 | SOLCI003896400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107015727 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_8630 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G2857 |
| Zosteraceae | Zostera marina | 2 | Zosma04g23930.v3.1, Zosma05g29230.v3.1 |