Basic Information
Locus ID:
Ag4G02444
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 299705423 | 299728810 | + | Ag4G02444 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.63 | 39,002.68 Da | 39.82 | 90.62 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 148 | 353 | 2.5E-15 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 35 | 350 | 1.4E-12 | IPR015943 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_017242267.1 | PREDICTED: uncharacterized protein LOC108214653 isoform X1 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A5B7BK16 | WD_REPEATS_REGION domain-containing protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_038588 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 8.305945 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 6.966739 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 9.787618 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 11.194304 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 11.146938 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 12.807287 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 7.376021 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 5.350614 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 17.870251 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 19.444481 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 14.697766 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 16.613249 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 15.916957 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 14.384291 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 6.908557 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 6.897164 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 7.383502 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 7.523304 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 6.706588 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 5.262458 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 7.382548 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 9.522857 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 8.935215 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 7.957893 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 7.61568 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 6.942612 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 6.556081 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 5.582761 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 8.766048 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 6.784155 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 8.565449 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 8.539087 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 25.735819 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 30.095615 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 23.263914 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 12.892956 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 6.495079 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 8.286143 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 8.598105 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 4.953745 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 4.172139 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 5.940252 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 10.902164 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 11.93786 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 10.43169 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 10.428615 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 8.724736 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 27.89427 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 27.87002 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 28.838856 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg23067 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30037860 |
| Apiaceae | Apium graveolens | 1 | Ag4G02444 |
| Arecaceae | Cocos nucifera | 1 | COCNU_11G000320 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103710097 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.388.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri9G08174 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1975 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2121 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno08g03710 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0048s00035.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g10220 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.207 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00022992 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.3994, BH02.4013, CH02.4042 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0041100, gene-QOZ80_1BG0091140 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0299660.1 |
| Poaceae | Oryza coarctata | 2 | Oco01G025840, Oco02G026770 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g64720.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G348600 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0601301, Pt_Chr0601326 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr02G003720, Chr05G029540 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G599900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG054290, gene_TRIDC3BG060940 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G378600.1, TraesCS3B02G411200.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb146700_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-28631 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g11621 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g16680 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-9736 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-2207 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-18106 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000018l.658 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003024 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-9630, nbisL1-mrna-9631 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-18647 |
| Salicaceae | Populus euphratica | 1 | populus_peu32562 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132627326 |
| Solanaceae | Solanum chilense | 1 | SOLCI000180400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107018361 |
| Zosteraceae | Zostera marina | 1 | Zosma04g15940.v3.1 |