Basic Information
Locus ID:
Ag4G02413
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
BPI LBP family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 298715031 | 298720458 | - | Ag4G02413 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.71 | 53,817.25 Da | 37.97 | 112.40 | 0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00025 | BPI1 | 36 | 261 | 5.9434E-40 | - |
| Pfam | PF01273 | LBP / BPI / CETP family, N-terminal domain | 44 | 214 | 7.3E-24 | IPR017942 |
| Pfam | PF02886 | LBP / BPI / CETP family, C-terminal domain | 283 | 473 | 2.7E-23 | IPR001124 |
| SUPERFAMILY | SSF55394 | Bactericidal permeability-increasing protein, BPI | 251 | 483 | 1.83E-37 | IPR017943 |
| SUPERFAMILY | SSF55394 | Bactericidal permeability-increasing protein, BPI | 38 | 248 | 8.63E-35 | IPR017943 |
| Gene3D | G3DSA:3.15.10.10 | - | 43 | 223 | 5.6E-117 | - |
| Gene3D | G3DSA:3.15.20.10 | - | 37 | 470 | 5.6E-117 | - |
| SMART | SM00329 | bpi2_2 | 283 | 481 | 1.7E-17 | IPR001124 |
| SMART | SM00328 | bpi1_3 | 39 | 265 | 1.1E-5 | IPR017942 |
| PIRSF | PIRSF002417 | Lipid_binding_protein | 13 | 487 | 3.4E-125 | IPR030675 |
Gene Ontology
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04970.1 | lipid-binding serum glycoprotein family protein. | 0 |
| RefSeq | XP_017249161.1 | PREDICTED: putative BPI/LBP family protein At1g04970 [Daucus carota subsp. sativus] | 0 |
| Q9MAU5 | Putative BPI/LBP family protein At1g04970 OS=Arabidopsis thaliana OX=3702 GN=At1g04970 PE=2 SV=1 | 0 | |
| TrEMBL | A0A164XNL7 | Serine/threonine-protein phosphatase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_016646 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 8.992262 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 10.312499 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 9.496219 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 13.356176 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 10.737753 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 16.349033 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 10.417371 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 9.579219 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 15.78671 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 16.555302 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 18.139997 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 14.968534 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 14.46325 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 14.501939 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 8.688134 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 6.763756 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 5.942027 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 3.9682 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 4.132962 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 3.286734 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 5.600699 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 1.006903 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 1.286618 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 1.634079 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 2.039551 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 5.832836 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 4.309017 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 5.215092 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 4.640212 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 3.071579 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 2.641617 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 2.376798 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 12.175617 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 8.125916 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 10.990006 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 9.168062 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 4.174404 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 5.578743 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 2.555878 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 1.497199 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 2.045228 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 1.463507 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 1.802793 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 3.537307 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 3.20413 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 1.621654 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 3.656402 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 17.038626 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 15.317169 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 11.802348 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg24573, jg38407 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_12202, gene_20616 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah008913, Ah038293 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_4g089210, BVRB_9g204550 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg14531, Sbi_jg18348, Sbi_jg36733, Sbi_jg53786 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg10382, Seu_jg4676 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00012689, GOSA_00017423 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl23472, Sgl28599, Sgl78233, Sgl80725 |
| Amaranthaceae | Chenopodium album | 7 | gene:ENSEOMG00000010185, gene:ENSEOMG00000013451 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.4AG0019380, CQ.Regalona.r1.4AG0023600 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30017620, pistato.v30156220 |
| Apiaceae | Apium graveolens | 5 | Ag11G03258, Ag1G00793, Ag4G02413, Ag5G00781, Ag5G02303 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G012470, scaffold019163G000020 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103696215, gene-LOC103713618 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2104.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri15G07835, Ftri2G05687 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G04970.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10007436m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g03840.v2.2, Sp3g18300.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB06g045760.2N, BniB06g045770.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq01G1372, Ceq02G2323 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl01G1536, Cgl02G2411 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g04910 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g08830 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG04.2156, evm.TU.LG05.1944 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00008733 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb1G03435, Lb2G10880, Lb8G35663, Lb8G36484 |
| Poaceae | Echinochloa crus-galli | 7 | AH03.2369, AH06.1277, BH03.2495, BH06.1324, CH03.2689 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_6AG0518910, gene-QOZ80_6AG0539330 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.5HG0490240.1, HORVU.MOREX.r3.7HG0674970.2 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_006102, gene-QYE76_029566 |
| Poaceae | Oryza coarctata | 4 | Oco11G008020, Oco12G008070, Oco17G007660, Oco18G007920 |
| Poaceae | Oryza sativa | 2 | LOC_Os06g20430.1, LOC_Os09g30474.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_02G221200, gene-BS78_10G130600 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0303850, Pt_Chr0303863, Pt_Chr0501120, Pt_Chr0701617 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr10G001580, Chr10G007540, Chr11G017160 |
| Poaceae | Thinopyrum elongatum | 3 | Tel5E01G417800, Tel5E01G418000, Tel7E01G405500 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC5AG019090, gene_TRIDC5BG043070 ... |
| Poaceae | Triticum aestivum | 7 | TraesCS5A02G261100.1, TraesCS5A02G261300.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb316440_P001, Zm00001eb381520_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-10479, nbis-gene-51648 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g30524, Zma_g31808 |
| Portulacaceae | Portulaca oleracea | 5 | evm.TU.LG02.2223, evm.TU.LG02.2224, evm.TU.LG02.515 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g09450 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_5_RagTag.1583, evm.TU.Scaffold_7_RagTag.123 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-12072, nbisL1-mrna-19608 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-1232, nbisL1-mrna-3981 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-10929, nbisL1-mrna-22295 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000006l.912, evm.TU.utg000028l.73 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00010356, Maker00013377 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-10439, nbisL1-mrna-8037 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-15519, nbisL1-mrna-22638 |
| Salicaceae | Populus euphratica | 2 | populus_peu00923, populus_peu26959 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132616871 |
| Solanaceae | Solanum chilense | 1 | SOLCI005641400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026378 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.24697_chr08_+, gene_2216 |
| Tamaricaceae | Tamarix chinensis | 2 | TC03G0847, TC05G2681 |
| Zosteraceae | Zostera marina | 1 | Zosma03g14350.v3.1 |