Basic Information
Locus ID:
Ag4G02402
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Cotton fibre expressed protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 298440913 | 298442226 | - | Ag4G02402 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.86 | 24,444.58 Da | 43.06 | 87.73 | -0.21 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_011461064.1 | PREDICTED: uncharacterized protein LOC105350538 [Fragaria vesca subsp. vesca] | 0 |
| TrEMBL | A0A164XQJ7 | DUF4408 domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_016720 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 1.291608 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 1.142962 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.055832 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0.204451 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 2.584887 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.509308 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.567218 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 0.816006 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 0.057643 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 0.412679 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 3.54398 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 6.36778 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 3.694791 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.416771 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0.952908 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 2.443164 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 3.128039 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 2.960494 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 9.520878 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 1.621034 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 5.18226 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 10.618373 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0.472158 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 5.422248 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0.491999 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0.130402 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0.199809 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 1.958484 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.667366 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.711311 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.350877 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.813691 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 0.43993 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 1.331166 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 4.337495 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 3.708608 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 6.473171 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 3.623589 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 7.295622 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 46.680473 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 15.203593 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 8.759109 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 1.888727 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 1.110686 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 2.146985 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0.498493 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 5.588162 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 2.040415 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 1.088135 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg21546, jg24560 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_12230 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah008832, Ah008833 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg18264, Sbi_jg36620 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg4605 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl23416, Sgl28541 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000029932, gene:ENSEOMG00000043679 |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.4AG0023040, CQ.Regalona.r1.4AG0023050 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30153350, pistato.v30155980 |
| Apiaceae | Apium graveolens | 1 | Ag4G02402 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G009400 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103713948 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2795.V1.1 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g07930 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g01750 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG05.1920, evm.TU.LG05.1921 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G03414 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.6HG0614920.1.CDS1 ... |
| Poaceae | Oryza coarctata | 2 | Oco01G011920, Oco02G012160 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g34790.1 |
| Poaceae | Thinopyrum elongatum | 3 | Tel6E01G547700, Tel7E01G719600, Tel7E01G719800 |
| Poaceae | Triticum aestivum | 15 | TraesCS6A02G305700.1.cds1, TraesCS6B02G334100.1.cds1 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-41929 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc04g01390, gene.Posoc04g23290 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.1583 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-19580, nbisL1-mrna-8693 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-10182 |
| Rhizophoraceae | Ceriops zippeliana | 11 | nbisL1-mrna-14060, nbisL1-mrna-15105, nbisL1-mrna-21065 ... |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000018l.32, add.evm.TU.utg000028l.44 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003840 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-20487 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-22692 |
| Salicaceae | Populus euphratica | 2 | populus_peu17871, populus_peu17872 |
| Solanaceae | Solanum chilense | 2 | SOLCI001046000, SOLCI002513100 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_12127, gene_12128 |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G0386 |
| Zosteraceae | Zostera marina | 2 | Zosma03g00920.v3.1, Zosma06g17790.v3.1 |