Basic Information
Locus ID:
Ag4G02304
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 294018942 | 294019330 | + | Ag4G02304 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.28 | 9,794.62 Da | 46.59 | 125.34 | 0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G42785.1 | 0 | |
| RefSeq | XP_017257553.1 | PREDICTED: uncharacterized protein LOC108227070 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A164VCX9 | Transmembrane protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_022478 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0.702448 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.79124 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.667987 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 0 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 0 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 0 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 0.268807 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 0 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 0 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0.151635 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 2.543234 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0.604238 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0.191492 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0.556786 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0.256209 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0.242824 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 0 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.200244 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.173543 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 0 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 0 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 0 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg22888 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_15674 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah019934 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg38200 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg15522 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl01614 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0012560, CQ.Regalona.r1.3BG0012660 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30046630 |
| Apiaceae | Apium graveolens | 1 | Ag4G02304 |
| Arecaceae | Cocos nucifera | 1 | COCNU_05G010340 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC108511170 |
| Asteraceae | Flaveria trinervia | 2 | Ftri10G12381, Ftri1G28378 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G42785.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10003407m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g07440.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB04g013350.2N, BniB04g017970.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1579 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl03G1705, Cgl03G1707 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g09560 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.594 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00002461, Pov_00002485, Pov_00015445 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb0G37762 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG08.221 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g20580 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.1159 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-9033 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-13905 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-15449 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000018l.156 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3012 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-20280 |
| Salicaceae | Populus euphratica | 3 | populus_peu15234, populus_peu32897, populus_peu33233 |
| Solanaceae | Solanum chilense | 2 | SOLCI002108800, SOLCI002963300 |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G2006 |