halophFGD

Basic Information

Locus ID: Ag4G02274

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Pentatricopeptide repeat-containing protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr4	291807338	291810340	-	Ag4G02274

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.33	77,183.55 Da	37.77	68.83	-0.50

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd09612	Jacalin	291	420	5.88069E-37	IPR033734
CDD	cd09612	Jacalin	552	684	1.04241E-41	IPR033734
CDD	cd09612	Jacalin	20	149	1.23715E-47	IPR033734
Pfam	PF01419	Jacalin-like lectin domain	22	151	5.3E-30	IPR001229
Pfam	PF01419	Jacalin-like lectin domain	551	684	3.2E-31	IPR001229
Pfam	PF01419	Jacalin-like lectin domain	291	420	3.2E-26	IPR001229
SUPERFAMILY	SSF51101	Mannose-binding lectins	8	151	2.75E-42	IPR036404
SUPERFAMILY	SSF51101	Mannose-binding lectins	541	683	3.27E-41	IPR036404
SUPERFAMILY	SSF51101	Mannose-binding lectins	281	420	3.92E-37	IPR036404
Gene3D	G3DSA:2.100.10.30	-	1	149	3.2E-54	IPR036404
Gene3D	G3DSA:2.100.10.30	-	533	684	7.3E-51	IPR036404
Gene3D	G3DSA:2.100.10.30	-	270	421	4.0E-47	IPR036404
SMART	SM00915	Jacalin_2	20	151	2.2E-40	IPR001229
SMART	SM00915	Jacalin_2	291	422	2.9E-32	IPR001229
SMART	SM00915	Jacalin_2	551	685	1.9E-41	IPR001229
ProSiteProfiles	PS51752	Jacalin-type lectin domain profile.	280	422	43.911354	IPR001229
ProSiteProfiles	PS51752	Jacalin-type lectin domain profile.	540	685	48.216408	IPR001229
ProSiteProfiles	PS51752	Jacalin-type lectin domain profile.	9	151	50.383003	IPR001229
MobiDBLite	mobidb-lite	consensus disorder prediction	217	255	-	-

Gene Ontology

Molecular Function:

GO:0030246 (carbohydrate binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G19715.1	Mannose-binding lectin superfamily protein.
RefSeq	XP_017241773.1	PREDICTED: jacalin-related lectin 3 [Daucus carota subsp. sativus]
Swiss-Prot	F4HQX1	Jacalin-related lectin 3 OS=Arabidopsis thaliana OX=3702 GN=JAL3 PE=2 SV=1
TrEMBL	A0A166AGA5	Jacalin-related lectin 3-like OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_009958 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	28.026981	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	38.741581	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	42.285805	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	53.369366	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	51.850964	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	13.664003	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	24.980427	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	12.007319	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	27.657663	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	29.814644	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	34.029591	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	25.484179	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	25.507505	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	21.875175	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	7.415894	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	27.0966	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	84.561188	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	39.483669	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	31.711687	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	56.209152	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	88.874825	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	267.768097	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	236.896866	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	318.437103	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	278.961792	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	107.67659	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	66.19796	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	114.374992	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	97.772133	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	2.207375		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	4.380596		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	3.183571		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	37.390961		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	56.484005		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	29.192663		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	10.573205		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	13.223456		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	12.342983		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	8.503672	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	33.204212	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	16.481924	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0.590545	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0.779088	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	11.199309	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	26.261105	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0.757534	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	41.117378	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	44.260242	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	85.635857	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	88.663651	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg10582, jg13569, jg22875, jg27248
Aizoaceae	Mesembryanthemum crystallinum	2	gene_23077, gene_23079
Amaranthaceae	Atriplex hortensis	2	Ah011355, Ah023472
Amaranthaceae	Beta vulgaris	4	BVRB_1g006640, BVRB_1g006650, BVRB_1g006670, BVRB_9g211560
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg28803, Sbi_jg3146, Sbi_jg3153, Sbi_jg39146
Amaranthaceae	Salicornia europaea	2	Seu_jg11011, Seu_jg6762
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00000023, GOSA_00009615, GOSA_00014151
Amaranthaceae	Suaeda glauca	9	Sgl11510, Sgl11514, Sgl11516, Sgl11596, Sgl11600, Sgl16965 ... Sgl16968, Sgl17093, Sgl17097
Amaranthaceae	Chenopodium album	9	gene:ENSEOMG00000013345, gene:ENSEOMG00000013653 ... gene:ENSEOMG00000015107, gene:ENSEOMG00000033716, gene:ENSEOMG00000035061, gene:ENSEOMG00000039654, gene:ENSEOMG00000047367, gene:ENSEOMG00000049597, gene:ENSEOMG00000052705
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.1AG0008880, CQ.Regalona.r1.1BG0016950 ... CQ.Regalona.r1.1BG0016970, CQ.Regalona.r1.7AG0015310, CQ.Regalona.r1.9BG0011020
Anacardiaceae	Pistacia vera	1	pistato.v30116130
Apiaceae	Apium graveolens	4	Ag1G00379, Ag2G02820, Ag4G02274, Ag6G01416
Arecaceae	Cocos nucifera	2	COCNU_06G013050, COCNU_06G013120
Arecaceae	Phoenix dactylifera	2	gene-LOC103717797, gene-LOC103719297
Asparagaceae	Asparagus officinalis	3	AsparagusV1_03.2115.V1.1, AsparagusV1_05.2895.V1.1 ... AsparagusV1_08.2928.V1.1
Asteraceae	Flaveria trinervia	6	Ftri10G02662, Ftri10G07324, Ftri10G25229, Ftri10G27720 ... Ftri10G32015, Ftri18G05095
Brassicaceae	Arabidopsis thaliana	2	AT1G19715.3, AT1G73040.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10007145m.g.v1.0, Thhalv10019210m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp1g17550.v2.2, Sp5g28000.v2.2
Brassicaceae	Brassica nigra	3	BniB03g008330.2N, BniB04g034420.2N, BniB05g070250.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq02G0901, Ceq03G0975
Casuarinaceae	Casuarina glauca	2	Cgl02G0914, Cgl03G1061
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno10g09320, gene.Cymno16g03180
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate01g03190, gene.Thate01g03210, gene.Thate09g07520
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-1340
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG01.13, evm.TU.LG06.628
Plantaginaceae	Plantago ovata	1	Pov_00015244
Plumbaginaceae	Limonium bicolor	12	Lb0G36806, Lb0G37360, Lb0G38063, Lb0G38278, Lb0G38317 ... Lb1G00549, Lb1G00551, Lb1G00554, Lb1G02726, Lb2G09419, Lb7G34303, Lb8G35786
Poaceae	Echinochloa crus-galli	9	AH02.3457, AH05.1812, AH08.2131, BH02.3499, BH05.1978 ... CH02.3041, CH02.3531, CH05.2044, CH08.2422
Poaceae	Eleusine coracana subsp. coracana	7	gene-QOZ80_1AG0035380, gene-QOZ80_1BG0080450 ... gene-QOZ80_1BG0085430, gene-QOZ80_5AG0364930, gene-QOZ80_5AG0367290, gene-QOZ80_5BG0412790, gene-QOZ80_5BG0415010
Poaceae	Hordeum vulgare	5	HORVU.MOREX.r3.1HG0076420.1, HORVU.MOREX.r3.1HG0080180.1 ... HORVU.MOREX.r3.3HG0223290.1, HORVU.MOREX.r3.3HG0292920.1, HORVU.MOREX.r3.7HG0682630.1
Poaceae	Lolium multiflorum	14	gene-QYE76_000100, gene-QYE76_014812, gene-QYE76_016264 ... gene-QYE76_017484, gene-QYE76_024985, gene-QYE76_030195, gene-QYE76_048484, gene-QYE76_048486, gene-QYE76_049155, gene-QYE76_049156, gene-QYE76_049165, gene-QYE76_049168, gene-QYE76_049169, gene-QYE76_049171
Poaceae	Oryza coarctata	7	Oco02G018700, Oco02G022290, Oco09G013680, Oco09G015600 ... Oco10G013760, Oco10G015470, Oco15G010450
Poaceae	Oryza sativa	2	LOC_Os01g51050.1, LOC_Os05g43240.1
Poaceae	Paspalum vaginatum	5	gene-BS78_03G250500, gene-BS78_03G294300, gene-BS78_K113200 ... gene-BS78_09G195900, gene-BS78_09G219000
Poaceae	Puccinellia tenuiflora	12	Pt_Chr0205493, Pt_Chr0205497, Pt_Chr0206968, Pt_Chr0206969 ... Pt_Chr0403695, Pt_Chr0503873, Pt_Chr0503896, Pt_Chr0504260, Pt_Chr0504311, Pt_Chr0601571, Pt_Chr0601601, Pt_Chr0700174
Poaceae	Sporobolus alterniflorus	11	Chr01G014880, Chr02G008190, Chr02G011660, Chr05G025350 ... Chr12G022010, Chr18G013400, Chr18G015100, Chr20G001510, Chr22G002450, Chr22G004290, Chr29G001880
Poaceae	Thinopyrum elongatum	4	Tel1E01G530900, Tel1E01G591000, Tel3E01G506800 ... Tel7E01G451800
Poaceae	Triticum dicoccoides	6	gene_TRIDC1AG048350, gene_TRIDC1BG054910 ... gene_TRIDC1BG061170, gene_TRIDC3AG045650, gene_TRIDC3BG023590, gene_TRIDC3BG051780
Poaceae	Triticum aestivum	23	TraesCS1A02G325500.1, TraesCS1A02G363600.1 ... TraesCS1B02G338600.1, TraesCS1B02G380700.1, TraesCS1D02G327100.1, TraesCS1D02G367900.1, TraesCS1D02G368600.1, TraesCS3A02G131600.1, TraesCS3A02G321000.1, TraesCS3B02G031800.1, TraesCS3B02G032600.1, TraesCS3B02G052500.1, TraesCS3B02G053100.1, TraesCS3B02G165200.1, TraesCS3B02G344800.1, TraesCS3D02G028700.1, TraesCS3D02G029200.1, TraesCS3D02G310300.1, TraesCS6A02G105700.1, TraesCS6B02G135000.1, TraesCS7A02G256100.1, TraesCS7B02G152700.1, TraesCS7D02G254500.1
Poaceae	Zea mays	4	Zm00001eb292320_P001, Zm00001eb342390_P002 ... Zm00001eb362900_P001, Zm00001eb369990_P001
Poaceae	Zoysia japonica	5	nbis-gene-11766, nbis-gene-11767, nbis-gene-12697 ... nbis-gene-14375, nbis-gene-24999
Poaceae	Zoysia macrostachya	5	Zma_g24404, Zma_g26906, Zma_g28703, Zma_g8504, Zma_g8764
Portulacaceae	Portulaca oleracea	4	evm.TU.LG04.1672, evm.TU.LG10.1158, evm.TU.LG19.563 ... evm.TU.LG24.25
Posidoniaceae	Posidonia oceanica	3	gene.Posoc03g11420, gene.Posoc04g19300, gene.Posoc09g05680
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_8_RagTag.1285, evm.TU.Scaffold_8_RagTag.1286
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-9058, nbisL1-mrna-9061, nbisL1-mrna-9062
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-19028
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-15363
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000018l.421
Rhizophoraceae	Kandelia obovata	1	Maker00002978
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-13340, nbisL1-mrna-13341
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-11138, nbisL1-mrna-11139
Salicaceae	Populus euphratica	6	populus_peu15272, populus_peu15273, populus_peu23891 ... populus_peu23895, populus_peu30628, populus_peu32931
Solanaceae	Lycium barbarum	5	gene-LOC132611111, gene-LOC132620346, gene-LOC132623605 ... gene-LOC132629141, gene-LOC132633440
Solanaceae	Solanum chilense	4	SOLCI001343200, SOLCI001343300, SOLCI001819000 ... SOLCI003839100
Solanaceae	Solanum pennellii	4	gene-LOC107002166, gene-LOC107014445, gene-LOC107016210 ... gene-LOC107017061
Tamaricaceae	Reaumuria soongarica	9	STRG.18917_chr07_-, STRG.18921_chr07_-, STRG.18923_chr07_- ... gene_10845, gene_10846, gene_155, gene_1697, gene_4839, gene_6767
Tamaricaceae	Tamarix chinensis	5	TC04G1639, TC08G1814, TC08G1816, TC08G1817, TC08G1820
Zosteraceae	Zostera marina	1	Zosma05g12300.v3.1