Basic Information
Locus ID:
Ag4G02259
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
iq-domain
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 290108253 | 290112885 | - | Ag4G02259 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.65 | 86,806.20 Da | 62.63 | 67.49 | -0.83 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00612 | IQ calmodulin-binding motif | 148 | 165 | 4.0E-4 | IPR000048 |
| Gene3D | G3DSA:1.20.5.190 | - | 125 | 166 | 7.2E-7 | - |
| ProSiteProfiles | PS50096 | IQ motif profile. | 146 | 175 | 8.8645 | IPR000048 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 610 | 635 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 277 | 317 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 371 | 419 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 391 | 419 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 375 | 389 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 192 | 221 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 750 | 786 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 648 | 675 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 579 | 593 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 566 | 786 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 290 | 317 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 700 | 715 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19870.1 | IQ-domain 32. | 0 |
| RefSeq | XP_017242389.1 | PREDICTED: protein IQ-DOMAIN 32-like [Daucus carota subsp. sativus] | 0 |
| Q9FXI5 | Protein IQ-DOMAIN 32 OS=Arabidopsis thaliana OX=3702 GN=IQD32 PE=1 SV=3 | 0 | |
| TrEMBL | A0A162AHL7 | DUF4005 domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_009937 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 23.102713 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 18.742155 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 20.877403 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 23.177229 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 24.72257 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 19.633514 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 14.646523 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 10.657415 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 73.88974 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 70.836029 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 73.413307 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 66.807777 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 57.143093 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 53.970615 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 38.787479 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 39.742626 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 39.549789 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 58.639908 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 45.325771 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 43.48872 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 43.566833 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 65.96888 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 76.774086 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 69.753227 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 60.413811 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 53.420933 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 63.266827 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 41.770569 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 58.899849 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 11.12632 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 13.068304 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 13.244714 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 13.345181 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 25.122988 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 19.292007 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 13.288646 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 10.101252 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 10.417656 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 64.577499 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 24.950249 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 6.014977 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 9.067871 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 30.707743 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 81.659363 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 72.940834 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 14.740586 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 99.821373 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 45.144791 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 42.839184 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 37.686981 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg11802 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_8502 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah036376 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg39750, Sbi_jg55103 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg14591 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00013118 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl12465, Sgl17743 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000016978, gene:ENSEOMG00000035795 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0018940, CQ.Regalona.r1.1BG0004250 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30047510, pistato.v30049570 |
| Apiaceae | Apium graveolens | 2 | Ag4G02259, Ag9G00864 |
| Arecaceae | Cocos nucifera | 3 | COCNU_07G001770, COCNU_08G006910, COCNU_10G001250 |
| Arecaceae | Phoenix dactylifera | 6 | gene-LOC103703868, gene-LOC103708215, gene-LOC103716349 ... |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.1651.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri6G31675, Ftri8G00256, Ftri9G11888 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G19870.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10006839m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g17670.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g008390.2N, BniB04g034620.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G0919 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G0994 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno03g05050, gene.Cymno10g04230 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g20490, gene.Thate08g19750 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-1347, nbisL1-mrna-8893 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.667 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00020711 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb0G37439, Lb3G15844 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.2610, BH09.2834, CH09.3033 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0300600, gene-QOZ80_4BG0331270 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0201150.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_047181 |
| Poaceae | Oryza coarctata | 2 | Oco07G018360, Oco08G017690 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g56740.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G270800 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0300429 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr23G001730, Chr25G001340, Chr26G017580, Chr30G001360 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G834900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG069530, gene_TRIDC2BG075120 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G492300.1, TraesCS2B02G520500.3 ... |
| Poaceae | Zea mays | 2 | Zm00001eb067350_P001, Zm00001eb432990_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-23114, nbis-gene-6107 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g20623, Zma_g22157, Zma_g22722 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG12.1709 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc02g12060, gene.Posoc06g08160 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.1253 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-19005 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-812 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-15382 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000018l.403 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003398 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-13359 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-11115 |
| Salicaceae | Populus euphratica | 2 | populus_peu15318, populus_peu32966 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132628098 |
| Solanaceae | Solanum chilense | 1 | SOLCI000409100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107017764 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.31215_chr11_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G2802 |
| Zosteraceae | Zostera marina | 3 | Zosma01g26330.v3.1, Zosma05g31600.v3.1, Zosma1103g00060.v3.1 |