Basic Information
Locus ID:
Ag4G02258
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 290104147 | 290105725 | - | Ag4G02258 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.13 | 40,552.47 Da | 61.92 | 78.88 | -0.39 |
Protein Domain:
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66270.1 | Zinc finger C-x8-C-x5-C-x3-H type family protein. | 0 |
| RefSeq | XP_017239008.1 | PREDICTED: zinc finger CCCH domain-containing protein 6-like [Daucus carota subsp. sativus] | 0 |
| Q9FH61 | Zinc finger CCCH domain-containing protein 68 OS=Arabidopsis thaliana OX=3702 GN=At5g66270 PE=2 SV=1 | 0 | |
| TrEMBL | A0A166AFQ8 | C3H1-type domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_009936 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0.843683 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 1.271531 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.947121 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0.950166 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 1.159472 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 1.476273 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 1.270473 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 1.440109 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 2.615335 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 3.20007 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 3.064242 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 4.517609 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 4.760973 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 2.835721 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 1.01383 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 1.559735 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0.721859 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 1.140049 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 1.168464 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 1.16015 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0.748536 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 1.791993 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 1.924578 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 1.552958 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0.746134 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0.795937 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0.587513 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0.572676 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0.705105 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.617811 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.543259 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.295916 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 1.775134 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 3.718771 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 3.280244 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.921921 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.784413 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 1.276149 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 1.792815 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 1.536886 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.630655 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 1.58886 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.61822 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0.861756 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.821537 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 1.690864 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0.707074 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 2.990097 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 2.405737 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 2.942416 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg11801, jg17192, jg22940, jg6340 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_24099 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah036386 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g129980 |
| Amaranthaceae | Salicornia bigelovii | 14 | Sbi_jg11754, Sbi_jg13359, Sbi_jg13360, Sbi_jg20368 ... |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg14816, Seu_jg9356 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00013378, GOSA_00016931 |
| Amaranthaceae | Suaeda glauca | 6 | Sgl12778, Sgl12802, Sgl18046, Sgl18053, Sgl34418, Sgl39829 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000018242, gene:ENSEOMG00000036142 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.1BG0004350 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30047520, pistato.v30049560 |
| Apiaceae | Apium graveolens | 2 | Ag3G02509, Ag4G02258 |
| Arecaceae | Cocos nucifera | 1 | COCNU_09G001920 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103696932 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.634.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri13G32128, Ftri8G16996 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT1G19860.1, AT3G51180.1, AT5G66270.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10004167m.g.v1.0, Thhalv10007764m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp1g17660.v2.2, Sp2g30310.v2.2, Sp5g11040.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB03g008380.2N, BniB04g034590.2N, BniB06g015730.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq03G0918, Ceq06G0202 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl03G0993, Cgl06G0218 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g05030 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0936s00006.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g20270, gene.Thate03g07520 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 5 | nbisL1-mrna-12502, nbisL1-mrna-1348, nbisL1-mrna-8894 ... |
| Nitrariaceae | Nitraria sibirica | 3 | evm.TU.LG02.2460, evm.TU.LG02.2461, evm.TU.LG06.668 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00020709 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb6G32176, Lb7G32745, Lb7G32750 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.2611, BH09.2835, CH09.3034 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_4AG0300590 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0201120.2 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_047178 |
| Poaceae | Oryza coarctata | 2 | Oco07G018370, Oco08G017700 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g56750.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G271100 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0300428, Pt_Chr0300456 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr18G006560, Chr23G001720, Chr25G001330, Chr26G017590 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G834800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG069500, gene_TRIDC2BG075090 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G492200.1, TraesCS2B02G520300.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb067340_P001, Zm00001eb433000_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-23115, nbis-gene-6109 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g20624, Zma_g22158 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.259, evm.TU.LG04.496 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc02g12080, gene.Posoc06g08140 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_3_RagTag.164, evm.TU.Scaffold_6_RagTag.2098 ... |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-17035, nbisL1-mrna-19004, nbisL1-mrna-299 ... |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-17022, nbisL1-mrna-19225, nbisL1-mrna-2378 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-11718, nbisL1-mrna-15383, nbisL1-mrna-5920 |
| Rhizophoraceae | Kandelia candel | 4 | add.evm.TU.utg000019l.480, evm.TU.utg000011l.1282 ... |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00003080, Maker00007442 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-13360, nbisL1-mrna-15650, nbisL1-mrna-6546 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-11114, nbisL1-mrna-2408, nbisL1-mrna-3017 |
| Salicaceae | Populus euphratica | 5 | populus_peu05929, populus_peu14151, populus_peu15319 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132604151 |
| Solanaceae | Solanum chilense | 1 | SOLCI002636500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107005411 |
| Tamaricaceae | Reaumuria soongarica | 3 | MSTRG.11501_chr06_-, STRG.8963_chr03_-, gene_1096 |
| Tamaricaceae | Tamarix chinensis | 2 | TC04G2805, TC09G0155 |
| Zosteraceae | Zostera marina | 3 | Zosma01g10700.v3.1, Zosma01g26350.v3.1, Zosma1103g00040.v3.1 |