halophFGD

Basic Information

Locus ID: Ag4G02246

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: RING-H2 finger protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr4	289635470	289640264	+	Ag4G02246

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.00	41,620.87 Da	57.48	79.89	-0.52

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd16461	RING-H2_EL5_like	138	181	7.95355E-16	-
Pfam	PF13639	Ring finger domain	138	181	1.3E-9	IPR001841
SUPERFAMILY	SSF57850	RING/U-box	133	186	4.54E-14	-
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	115	188	1.9E-17	IPR013083
SMART	SM00184	ring_2	139	180	3.7E-4	IPR001841
ProSiteProfiles	PS50089	Zinc finger RING-type profile.	139	181	10.158304	IPR001841
MobiDBLite	mobidb-lite	consensus disorder prediction	225	249	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	228	245	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	315	339	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	37	56	-	-

KEGG Pathway

KO Term:

K19041 (E3 ubiquitin-protein ligase RNF38/44 [EC:2.3.2.27])

Best hit

Source	Best Hit ID	Description
TAIR	AT5G05810.1	RING/U-box superfamily protein.
RefSeq	XP_017254637.1	PREDICTED: RING-H2 finger protein ATL43 [Daucus carota subsp. sativus]
Swiss-Prot	Q5EAE9	RING-H2 finger protein ATL43 OS=Arabidopsis thaliana OX=3702 GN=ATL43 PE=2 SV=2
TrEMBL	A0A7J0FC61	RING/U-box superfamily protein OS=Actinidia rufa OX=165716 GN=Acr_11g0005090 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0.672644	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	1.330405	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0.801617	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0.628172	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0.915118	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0.561188	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.426495	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.998749	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	0.690452	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	0.780083	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	0.880944	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	1.35948	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	1.022181	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	1.148953	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	1.073118	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	1.544747	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	1.667176	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	2.181746	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	1.496254	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	1.679459	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	0.950933	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0.976873	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	2.001124	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0.47357	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	1.767657	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	1.78275	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	1.177398	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	1.209002	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	1.376872	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.691304		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	1.612451		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	1.798391		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	2.434489		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	2.063855		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	3.832051		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	1.166509		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	2.292212		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	1.413421		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	1.344144	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0.315825	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0.475081	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0.715146	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0.128102	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0.333862	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0.992108	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0.64303	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0.835732	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	1.007363	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	1.169162	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	0.967585	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	10	jg15491, jg15725, jg267, jg31456, jg32993, jg36717, jg36718 ... jg36721, jg4121, jg415
Aizoaceae	Mesembryanthemum crystallinum	2	gene_9106, gene_9147
Amaranthaceae	Atriplex hortensis	2	Ah014595, Ah014750
Amaranthaceae	Beta vulgaris	2	BVRB_8g197070, BVRB_8g198260
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg25034, Sbi_jg25150, Sbi_jg8882, Sbi_jg8993
Amaranthaceae	Salicornia europaea	2	Seu_jg19599, Seu_jg19720
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00007651, GOSA_00007756
Amaranthaceae	Suaeda glauca	4	Sgl32742, Sgl38029, Sgl42271, Sgl47047
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000009813, gene:ENSEOMG00000010266 ... gene:ENSEOMG00000032636, gene:ENSEOMG00000035082, gene:ENSEOMG00000045334, gene:ENSEOMG00000046006
Amaranthaceae	Chenopodium quinoa	3	CQ.Regalona.r1.8AG0018510, CQ.Regalona.r1.8BG0022680 ... CQ.Regalona.r1.8BG0023860
Anacardiaceae	Pistacia vera	3	pistato.v30253730, pistato.v30256960, pistato.v30287320
Apiaceae	Apium graveolens	4	Ag10G01515, Ag10G02737, Ag4G02246, Ag5G01577
Arecaceae	Cocos nucifera	3	COCNU_02G018760, COCNU_06G005340, COCNU_11G012950
Arecaceae	Phoenix dactylifera	2	gene-LOC103714078, gene-LOC103715572
Asparagaceae	Asparagus officinalis	1	AsparagusV1_05.2475.V1.1
Asteraceae	Flaveria trinervia	5	Ftri12G33884, Ftri15G02251, Ftri4G13641, Ftri4G25055 ... Ftri7G04312
Brassicaceae	Arabidopsis thaliana	3	AT2G20030.1, AT4G28890.1, AT5G05810.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10001998m.g.v1.0, Thhalv10013693m.g.v1.0 ... Thhalv10025235m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp3g33350.v2.2, Sp6g37090.v2.2, Sp7g26870.v2.2
Brassicaceae	Brassica nigra	8	BniB02g015920.2N, BniB02g054880.2N, BniB02g083800.2N ... BniB03g011570.2N, BniB03g069580.2N, BniB03g069590.2N, BniB03g069600.2N, BniB05g008660.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq04G2047, Ceq06G1535
Casuarinaceae	Casuarina glauca	2	Cgl04G2240, Cgl06G1589
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno01g07870, gene.Cymno06g03250, gene.Cymno06g06350
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate02g25210, gene.Thate02g34230, gene.Thate04g11690
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG07.1126, evm.TU.LG07.536
Plantaginaceae	Plantago ovata	5	Pov_00000441, Pov_00000443, Pov_00003900, Pov_00013631 ... Pov_00023004
Poaceae	Echinochloa crus-galli	7	AH03.889, AH06.2827, BH06.2627, CH01.2740, CH01.2942 ... CH05.2112, CH06.2931
Poaceae	Eleusine coracana subsp. coracana	3	gene-QOZ80_5AG0360700, gene-QOZ80_6AG0549600 ... gene-QOZ80_6BG0503020
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.7HG0728910.1.CDS1
Poaceae	Lolium multiflorum	3	gene-QYE76_013725, gene-QYE76_035585, gene-QYE76_035805
Poaceae	Oryza coarctata	3	Oco10G018560, Oco11G016060, Oco12G016350
Poaceae	Oryza sativa	2	LOC_Os05g51780.1, LOC_Os06g48065.1
Poaceae	Paspalum vaginatum	3	gene-BS78_09G261700, gene-BS78_10G248300, gene-BS78_K112400
Poaceae	Sporobolus alterniflorus	6	Chr02G032480, Chr05G001510, Chr0G020470, Chr0G029830 ... Chr10G021250, Chr11G001310
Poaceae	Thinopyrum elongatum	2	Tel1E01G752500, Tel7E01G715700
Poaceae	Triticum dicoccoides	4	gene_TRIDC1AG065270, gene_TRIDC1BG074550 ... gene_TRIDC7AG059590, gene_TRIDC7BG052480
Poaceae	Triticum aestivum	6	TraesCS1A02G444900.1.cds1, TraesCS1B02G479700.1.cds1 ... TraesCS1D02G453000.1.cds1, TraesCS7B02G327800.1.cds1, TraesCS7D02G420000.1.cds1, TraesCSU02G093700.1.cds1
Poaceae	Zea mays	3	Zm00001eb226440_P001, Zm00001eb297810_P001 ... Zm00001eb345580_P001
Poaceae	Zoysia japonica	3	nbis-gene-55182, nbis-gene-57830, nbis-gene-9659
Poaceae	Zoysia macrostachya	2	Zma_g28938, Zma_g31061
Portulacaceae	Portulaca oleracea	3	evm.TU.LG16.1580, evm.TU.LG23.1068, evm.TU.LG26.87
Posidoniaceae	Posidonia oceanica	2	gene.Posoc03g15180, gene.Posoc03g22510
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_4_RagTag.1997
Rhizophoraceae	Carallia pectinifolia	6	nbisL1-mrna-13084, nbisL1-mrna-13717, nbisL1-mrna-15764 ... nbisL1-mrna-25510, nbisL1-mrna-25670, nbisL1-mrna-27368
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-14771, nbisL1-mrna-4969
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-16843, nbisL1-mrna-4772
Rhizophoraceae	Kandelia candel	2	add.evm.TU.utg000008l.431, add.evm.TU.utg000033l.97
Rhizophoraceae	Kandelia obovata	2	Maker00001146, Maker00014705
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-18354, nbisL1-mrna-22494, nbisL1-mrna-22704 ... nbisL1-mrna-22705
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-21005, nbisL1-mrna-8262
Salicaceae	Populus euphratica	5	populus_peu02640, populus_peu04908, populus_peu12756 ... populus_peu21960, populus_peu28427
Solanaceae	Lycium barbarum	3	gene-LOC132603098, gene-LOC132638779, gene-LOC132642582
Solanaceae	Solanum chilense	3	SOLCI001621200, SOLCI003483400, SOLCI004345000
Solanaceae	Solanum pennellii	3	gene-LOC107006714, gene-LOC107020066, gene-LOC107024579
Tamaricaceae	Tamarix chinensis	1	TC10G1459
Zosteraceae	Zostera marina	4	Zosma03g05950.v3.1, Zosma03g19540.v3.1, Zosma05g25240.v3.1 ... Zosma06g12230.v3.1