halophFGD

Basic Information

Locus ID: Ag4G02239

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Belongs to the protein kinase superfamily

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr4	289386461	289389018	+	Ag4G02239

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.40	31,187.79 Da	53.85	68.90	-0.56

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF07714	Protein tyrosine and serine/threonine kinase	78	171	5.3E-14	IPR001245
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	60	164	2.25E-23	IPR011009
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	31	150	1.3E-25	-
SMART	SM00220	serkin_6	74	224	0.006	IPR000719
ProSiteProfiles	PS50011	Protein kinase domain profile.	74	273	10.902274	IPR000719
ProSitePatterns	PS00107	Protein kinases ATP-binding region signature.	80	102	-	IPR017441

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K04733 (interleukin-1 receptor-associated kinase 4 [EC:2.7.11.1])

Pathway:

ko04010 (MAPK signaling pathway) map04010 (MAPK signaling pathway) map04064 (NF-kappa B signaling pathway) map04620 (Toll-like receptor signaling pathway) map04621 (NOD-like receptor signaling pathway) ko04624 (Toll and Imd signaling pathway) map04624 (Toll and Imd signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G18890.1	Protein kinase superfamily protein.
RefSeq	XP_017239076.1	PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670 [Daucus carota subsp. sativus]
Swiss-Prot	Q5XF57	Probable receptor-like serine/threonine-protein kinase At5g57670 OS=Arabidopsis thaliana OX=3702 GN=At5g57670 PE=2 SV=1
TrEMBL	A0A162AHJ7	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_009917 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	2.619762	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	8.400684	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	9.409621	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	11.01111	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0.898425	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	1.68503	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	9.117776	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	9.617227	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	11.820015	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	7.887163	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	10.665315	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	13.690993	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0.437085	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	1.850018	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	2.848869	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	5.532012	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	3.697883	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	5.908169	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	5.770574	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	14.927383	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	17.674395	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	14.749235	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	11.953671	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	12.504315	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	9.23634	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	9.876596	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	10.934952	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	10.059342		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	13.389024		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	10.33839		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0.667043		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	6.458919		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0.305583		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0.083395		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	2.211302		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	2.066903		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	2.455526	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	2.429439	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	2.377957	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0.89396	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	2.708262	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	1.545947	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0.274015	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	4.101876	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	15.038758	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	17.697926	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	21.444647	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Apiaceae	Apium graveolens	3	Ag1G00821, Ag4G02239, AgUnG00704