halophFGD

Basic Information

Locus ID: Ag4G02213

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Belongs to the bacterial ribosomal protein bL35 family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr4	287004421	287007851	-	Ag4G02213

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
11.24	16,915.82 Da	42.19	88.49	-0.35

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF01632	Ribosomal protein L35	83	139	1.5E-20	IPR021137
SUPERFAMILY	SSF143034	L35p-like	83	145	1.11E-20	IPR037229
Gene3D	G3DSA:4.10.410.60	-	84	146	5.8E-21	IPR037229
TIGRFAM	TIGR00001	rpmI_bact: ribosomal protein bL35	83	145	2.2E-24	IPR001706
ProSitePatterns	PS00936	Ribosomal protein L35 signature.	86	112	-	IPR018265
PRINTS	PR00064	Ribosomal protein L35 signature	102	116	1.2E-19	IPR001706
PRINTS	PR00064	Ribosomal protein L35 signature	117	135	1.2E-19	IPR001706
PRINTS	PR00064	Ribosomal protein L35 signature	84	101	1.2E-19	IPR001706
Hamap	MF_00514	50S ribosomal protein L35 [rpmI].	82	145	15.834119	IPR001706

Gene Ontology

Biological Process:

GO:0006412 (translation)

Molecular Function:

GO:0003735 (structural constituent of ribosome)

Cellular Component:

GO:0005840 (ribosome)

KEGG Pathway

KO Term:

K02916 (large subunit ribosomal protein L35)

Pathway:

ko03010 (Ribosome) map03010 (Ribosome)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G24090.1	Ribosomal protein L35.
RefSeq	XP_017238655.1	PREDICTED: 50S ribosomal protein L35, chloroplastic-like [Daucus carota subsp. sativus]
Swiss-Prot	P23326	Large ribosomal subunit protein bL35c OS=Spinacia oleracea OX=3562 GN=RPL35 PE=1 SV=1
TrEMBL	A0A6I9TAI5	50S ribosomal protein L35 OS=Sesamum indicum OX=4182 GN=LOC105162894 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	117.010635	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	91.073463	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	60.034164	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	61.796829	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	66.210686	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	51.769627	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	30.547697	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	22.38043	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	165.099579	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	154.796295	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	163.948807	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	138.628922	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	148.686874	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	165.133026	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	123.419998	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	154.346756	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	205.798859	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	255.104828	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	388.067261	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	203.063324	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	180.833435	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	100.9412	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	94.133682	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	163.356339	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	180.706772	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	258.548553	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	311.397339	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	332.906097	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	253.222183	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	485.925781		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	492.929291		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	433.098206		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	101.244438		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	160.80632		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	100.826279		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	229.245987		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	270.042694		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	242.356247		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	908.099243	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	699.509827	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	926.086853	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	60.523781	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	38.60173	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	43.158741	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	39.503853	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	54.834198	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	39.701843	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	243.293137	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	231.084961	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	208.928558	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	1	jg33107
Aizoaceae	Mesembryanthemum crystallinum	1	gene_10874
Amaranthaceae	Atriplex hortensis	1	Ah014914
Amaranthaceae	Beta vulgaris	1	BVRB_8g191720
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg24784, Sbi_jg8650
Amaranthaceae	Salicornia europaea	1	Seu_jg19956
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00022272
Amaranthaceae	Suaeda glauca	2	Sgl42560, Sgl47314
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000009573, gene:ENSEOMG00000033049 ... gene:ENSEOMG00000044892
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.8AG0017290, CQ.Regalona.r1.8BG0018300
Anacardiaceae	Pistacia vera	1	pistato.v30264860
Apiaceae	Apium graveolens	1	Ag4G02213
Arecaceae	Phoenix dactylifera	1	gene-LOC103712810
Asparagaceae	Asparagus officinalis	1	AsparagusV1_02.312.V1.1
Asteraceae	Flaveria trinervia	1	Ftri8G18801
Brassicaceae	Arabidopsis thaliana	1	AT2G24090.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10000362m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp4g02990.v2.2
Brassicaceae	Brassica nigra	2	BniB01g019630.2N, BniB02g021410.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq03G2615
Casuarinaceae	Casuarina glauca	1	Cgl03G2765
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno01g07340
Dunaliellaceae	Dunaliella salina	1	Dusal.0118s00009.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate04g10370
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG07.350
Plantaginaceae	Plantago ovata	1	Pov_00000763
Plumbaginaceae	Limonium bicolor	1	Lb5G26638
Poaceae	Echinochloa crus-galli	3	AH06.2457, BH06.2256, CH06.2484
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_6AG0546430, gene-QOZ80_6BG0499800
Poaceae	Lolium multiflorum	3	gene-QYE76_036602, gene-QYE76_036630, gene-QYE76_036831
Poaceae	Oryza coarctata	2	Oco11G013890, Oco12G014080
Poaceae	Oryza sativa	1	LOC_Os06g43900.1
Poaceae	Paspalum vaginatum	1	gene-BS78_10G207900
Poaceae	Puccinellia tenuiflora	1	Pt_Chr0401551
Poaceae	Sporobolus alterniflorus	4	Chr05G008650, Chr0G007730, Chr10G019060, Chr11G003530
Poaceae	Thinopyrum elongatum	2	Tel7E01G443300, Tel7E01G876500
Poaceae	Triticum dicoccoides	2	gene_TRIDC7AG071620, gene_TRIDC7BG066890
Poaceae	Triticum aestivum	3	TraesCS7B02G421100.1, TraesCS7D02G499800.1 ... TraesCSU02G093800.1
Poaceae	Zea mays	2	Zm00001eb000270_P001, Zm00001eb386680_P001
Poaceae	Zoysia japonica	2	nbis-gene-40894, nbis-gene-9907
Poaceae	Zoysia macrostachya	2	Zma_g30898, Zma_g33148
Portulacaceae	Portulaca oleracea	2	evm.TU.LG02.2600, evm.TU.LG23.823
Posidoniaceae	Posidonia oceanica	3	gene.Posoc01g32280, gene.Posoc03g12360, gene.Posoc03g13450
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-13399
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-21235
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-16615
Rhizophoraceae	Kandelia obovata	1	Maker00014693
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-14573
Salicaceae	Populus euphratica	1	populus_peu05549
Solanaceae	Lycium barbarum	1	gene-LOC132602909
Solanaceae	Solanum chilense	1	SOLCI004411500
Solanaceae	Solanum pennellii	1	gene-LOC107026300
Tamaricaceae	Reaumuria soongarica	1	STRG.12568_chr02_-
Tamaricaceae	Tamarix chinensis	1	TC10G0931
Zosteraceae	Zostera marina	1	Zosma03g19320.v3.1