Basic Information
Locus ID:
Ag4G02212
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Autophagy-related protein 11
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 286994077 | 287002267 | + | Ag4G02212 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.51 | 128,671.75 Da | 43.66 | 80.75 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17039 | Ubl_ubiquitin_like | 16 | 85 | 2.42712E-4 | - |
| Pfam | PF10377 | Autophagy-related protein 11 | 983 | 1127 | 1.0E-18 | IPR019460 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 16 | 90 | 2.31E-7 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 15 | 96 | 2.6E-5 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 796 | 822 | - | - |
| Coils | Coil | Coil | 625 | 645 | - | - |
| Coils | Coil | Coil | 870 | 890 | - | - |
| Coils | Coil | Coil | 978 | 1012 | - | - |
| Coils | Coil | Coil | 654 | 681 | - | - |
| Coils | Coil | Coil | 835 | 862 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G30790.1 | 0 | |
| RefSeq | XP_017241987.1 | PREDICTED: autophagy-related protein 11-like [Daucus carota subsp. sativus] | 0 |
| Q9SUG7 | Autophagy-related protein 11 OS=Arabidopsis thaliana OX=3702 GN=ATG11 PE=1 SV=1 | 0 | |
| TrEMBL | A0A166AER8 | ATG11 domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_009892 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 16.942793 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 14.543405 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 18.900887 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 17.900932 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 17.334412 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 23.986153 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 20.753452 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 31.050707 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 11.414898 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 12.071805 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 12.268321 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 10.954928 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 11.928545 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 9.697591 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 4.310826 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 3.290438 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 4.971005 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 5.911452 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 3.582763 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 5.522012 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 7.029086 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 8.685763 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 7.569675 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 6.306026 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 6.999749 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 8.326589 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 6.746538 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 8.677328 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 6.929334 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 3.892897 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 4.35962 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 2.889653 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 8.651131 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 7.084464 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 7.641598 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 6.226236 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 3.199127 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 3.544595 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 6.717188 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 6.227022 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 4.395252 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 7.772434 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 9.023074 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 12.041192 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 13.601391 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 7.611426 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 13.800307 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 8.889589 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 13.139877 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 14.162838 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg15624, jg4019 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_9213 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah014917 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g191690 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg24781, Sbi_jg8647 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19959 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00022276 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl42563, Sgl47317 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009801, gene:ENSEOMG00000034568 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0017320, CQ.Regalona.r1.8BG0018270 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30265050 |
| Apiaceae | Apium graveolens | 2 | Ag10G02785, Ag4G02212 |
| Arecaceae | Cocos nucifera | 1 | scaffold001929G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103722038 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.3421.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri15G00996, Ftri4G21455, Ftri8G28263 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G30790.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10024256m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g28660.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g085020.2N, BniB05g007000.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2613 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2763 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g07310 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0384s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g10320 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-45 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.316 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00000767 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb5G26629 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.582, BH07.708, CH07.588 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0103730, gene-QOZ80_2BG0157040 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0569320.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_021039 |
| Poaceae | Oryza coarctata | 2 | Oco03G004050, Oco04G004000 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g08350.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G059900 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0202321 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr06G034020, Chr15G025290 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G308400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG020550, gene_TRIDC6BG026460 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G149000.2, TraesCS6B02G177000.1 ... |
| Poaceae | Zea mays | 6 | Zm00001eb110220_P001, Zm00001eb206680_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-33598, nbis-gene-44179 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g12305 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.2597, evm.TU.LG23.820 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g13410 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_10_RagTag.183, evm.TU.Scaffold_10_RagTag.519 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-13402, nbisL1-mrna-25334 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-21236, nbisL1-mrna-8763 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-16611, nbisL1-mrna-4905 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000008l.1257, evm.TU.utg000033l.119 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00001287, Maker00015078 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-16648, nbisL1-mrna-1937 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-14569, nbisL1-mrna-9241 |
| Salicaceae | Populus euphratica | 3 | populus_peu05552, populus_peu05553, populus_peu12199 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132602912, gene-LOC132605856 |
| Solanaceae | Solanum chilense | 1 | SOLCI004411200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026207 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_9101 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G0714 |
| Zosteraceae | Zostera marina | 1 | Zosma03g05980.v3.1 |