Basic Information
Locus ID:
Ag4G02190
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
F-Box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 285715980 | 285719406 | + | Ag4G02190 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.86 | 52,066.25 Da | 52.20 | 67.06 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 40 | 81 | 3.7E-6 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 40 | 112 | 4.19E-13 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 29 | 118 | 8.0E-8 | - |
| SMART | SM00256 | fbox_2 | 43 | 84 | 1.7E-4 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 37 | 84 | 11.087133 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G12350.1 | F-box family protein. | 0 |
| RefSeq | XP_017242909.1 | PREDICTED: F-box protein At3g12350-like [Daucus carota subsp. sativus] | 0 |
| Q84WW1 | F-box protein At3g12350 OS=Arabidopsis thaliana OX=3702 GN=At3g12350 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5B7BGU8 | F-box domain-containing protein OS=Davidia involucrata OX=16924 GN=Din_037508 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 15.480917 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 15.86531 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 11.986986 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 9.857595 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 12.787433 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 11.663562 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 14.011926 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 18.169712 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 27.182886 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 22.443436 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 29.555103 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 32.6506 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 30.424553 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 25.038624 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 8.447924 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 9.047944 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 11.420015 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 11.37123 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 11.456335 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 11.208794 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 12.692873 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 19.81517 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 18.036982 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 19.202742 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 17.167568 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 15.301456 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 13.198028 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 13.27813 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 15.280204 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 6.076968 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 7.088936 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 6.661909 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 17.905901 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 21.311203 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 16.642895 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 9.940724 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 5.505773 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 6.504618 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 16.377438 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 8.842369 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 8.219787 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 31.54467 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 22.972439 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 16.257792 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 20.317987 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 23.634205 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 16.999565 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 17.007854 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 19.854034 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 14.228413 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg10726 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_4836 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah036697 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g015000 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg39681, Sbi_jg55030 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg14654 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00013185 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl12525, Sgl17798 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000018158, gene:ENSEOMG00000035288 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0017410, CQ.Regalona.r1.1BG0007810 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30043000 |
| Apiaceae | Apium graveolens | 2 | Ag2G02282, Ag4G02190 |
| Arecaceae | Cocos nucifera | 1 | COCNU_05G003650 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103711325, gene-LOC103722769, gene-LOC120105055 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_08.1089.V1.1, AsparagusV1_08.1090.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri10G21127 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G12350.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10028685m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g10510.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g034260.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1280 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G1385 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g13810 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g09820, gene.Thate06g14710 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-1207, nbisL1-mrna-5211 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.330 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00027497 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb7G33063 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.3586, BH05.3606, CH05.3778 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0448240.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_002192, gene-QYE76_002469 |
| Poaceae | Oryza coarctata | 2 | Oco23G007330, Oco24G006950 |
| Poaceae | Oryza sativa | 1 | LOC_Os12g32630.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G081900 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr06G016640, Chr19G010130, Chr27G006300 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G186200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG016010, gene_TRIDC5BG017820 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G103000.1, TraesCS5B02G107300.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb264620_P004 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-30189, nbis-gene-48651 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g25118 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.648, evm.TU.LG12.1018 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g25880, gene.Posoc06g18100 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_8_RagTag.903, evm.TU.Scaffold_8_RagTag.904 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-9334 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-20417 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-20620 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000018l.274 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003417 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-11451 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-17118 |
| Salicaceae | Populus euphratica | 1 | populus_peu32065 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132627764 |
| Solanaceae | Solanum chilense | 1 | SOLCI007093300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107015679 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.31071_chr11_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G2670 |
| Zosteraceae | Zostera marina | 1 | Zosma06g10940.v3.1 |