Basic Information
Locus ID:
Ag4G02130
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 282826484 | 282827792 | - | Ag4G02130 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.12 | 32,459.27 Da | 51.27 | 96.45 | 0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G55970.3 | - | 0 |
| RefSeq | XP_017217870.1 | PREDICTED: E3 ubiquitin-protein ligase At1g63170-like [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A164SU60 | RING-type domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_023775 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.232899 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 0 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 0 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 0 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 0.10312 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 0 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 0 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.155748 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0.121386 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0.412411 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0.435403 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0.073445 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0.284345 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0.154174 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.076083 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 0.170763 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0.151185 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.039577 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 0 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 0 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 0 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg20203, jg21633, jg24629 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_12121 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah009101 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g090760 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg18558, Sbi_jg36965 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg4829 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017304 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl23594, Sgl28794, Sgl28795, Sgl28802 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000011636, gene:ENSEOMG00000030881 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2BG0000630, CQ.Regalona.r1.4BG0026300 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30151860, pistato.v30152130 |
| Apiaceae | Apium graveolens | 2 | Ag4G02130, Ag5G02738 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G008670 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103708152 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2940.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G31741 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT4G26580.1, AT5G55970.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10014037m.g.v1.0, Thhalv10025652m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp6g17820.v2.2, Sp7g24540.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g034720.2N, BniB05g010820.2N, BniB08g014850.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G1515 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno01g04390, gene.Cymno06g09880 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g19980 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-9022 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.2071 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00037963 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G22451 |
| Poaceae | Echinochloa crus-galli | 2 | AH02.2887, CH02.3563 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0030160, gene-QOZ80_1BG0080210 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0283290.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_054787 |
| Poaceae | Oryza coarctata | 2 | Oco01G018290, Oco02G018530 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g50750.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G247600 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0602578 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr03G014330, Chr05G021830, Chr05G021840, Chr08G014600 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G427900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG038140, gene_TRIDC3BG042920 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G254400.1, TraesCS3B02G286400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb155600_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-12672, nbis-gene-26241 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g10969, Zma_g8489 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG02.620, evm.TU.LG09.2057, evm.TU.LG09.2058 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g08820 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_7_RagTag.52, evm.TU.Scaffold_8_RagTag.1662 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-19699, nbisL1-mrna-8818 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-3323, nbisL1-mrna-4024 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-15040, nbisL1-mrna-22350 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000018l.24, evm.TU.utg000028l.30 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00003731, Maker00010601 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-7986, nbisL1-mrna-9366 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-22575, nbisL1-mrna-23743 |
| Salicaceae | Populus euphratica | 3 | populus_peu00867, populus_peu17799, populus_peu17806 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132618753, gene-LOC132636284 |
| Solanaceae | Solanum chilense | 2 | SOLCI000499500, SOLCI001865700 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107005662, gene-LOC107024545 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.20770_chr08_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G2573 |
| Zosteraceae | Zostera marina | 2 | Zosma05g14490.v3.1, Zosma05g21980.v3.1 |