Basic Information
Locus ID:
Ag4G02096
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 280544794 | 280546588 | - | Ag4G02096 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.65 | 32,123.75 Da | 49.69 | 67.64 | -0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 198 | 240 | 1.6E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 190 | 249 | 1.32E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 182 | 257 | 5.6E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 199 | 239 | 5.1E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 199 | 240 | 13.640012 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G58720.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_017238826.1 | PREDICTED: E3 ubiquitin-protein ligase Arkadia-like [Daucus carota subsp. sativus] | 0 |
| Q8LPN7 | E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1 | 0 | |
| TrEMBL | A0A166AC31 | RING-type domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_009780 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 8.32774 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 22.577852 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 11.303245 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 14.573499 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 14.418008 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 5.650872 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 11.406948 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 7.276541 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 9.450189 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 8.276545 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 8.178541 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 7.792027 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 9.011851 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 7.046027 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 1.684588 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 6.075751 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 16.400412 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 5.521696 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 9.944007 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 8.102416 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 9.948291 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 69.983131 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 63.819775 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 65.252357 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 49.834553 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 23.787949 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 15.568631 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 17.264877 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 22.931938 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 3.022091 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 5.068099 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 6.193595 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 4.849006 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 27.119047 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 5.371451 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 4.34673 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.790514 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 2.066638 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 3.764943 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 13.976423 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 8.595615 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 1.779797 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 3.317017 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 2.924159 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 5.427908 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 2.066883 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 7.721509 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 40.80035 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 81.150993 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 112.506294 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg38190 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g208950 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg11987, Sbi_jg46916 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg21204 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00009545 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl82856 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000051964 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.9BG0012950 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30089060 |
| Apiaceae | Apium graveolens | 1 | Ag4G02096 |
| Arecaceae | Cocos nucifera | 1 | COCNU_14G002410 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103708969 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.958.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri11G23667, Ftri8G13369 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G58720.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10006182m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g04130.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB06g054720.2N, BniB08g073260.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G2896 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G3018 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g09360 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate07g08430 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2050 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.1679 |
| Poaceae | Echinochloa crus-galli | 2 | AH03.1652, BH03.1802 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_6AG0532860 |
| Poaceae | Oryza coarctata | 1 | Oco18G002870 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g17610.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G158100 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr10G011750, Chr11G010570 |
| Poaceae | Zea mays | 1 | Zm00001eb098400_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-19852 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g32543 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG06.1034, evm.TU.LG11.228 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc08g02440 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-1853, nbisL1-mrna-4851 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-11172 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013379 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132616713 |
| Solanaceae | Solanum chilense | 1 | SOLCI005367400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107024596 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.8243_chr05_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G2430 |