Basic Information
Locus ID:
Ag4G02095
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
ATP-dependent zinc metalloprotease FTSH 2
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 280526334 | 280530842 | - | Ag4G02095 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.74 | 74,136.80 Da | 33.42 | 92.15 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 243 | 400 | 2.26513E-28 | - |
| Pfam | PF17862 | AAA+ lid domain | 423 | 466 | 5.2E-11 | IPR041569 |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 268 | 399 | 1.0E-45 | IPR003959 |
| Pfam | PF01434 | Peptidase family M41 | 482 | 670 | 5.9E-68 | IPR000642 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 227 | 471 | 1.96E-68 | IPR027417 |
| SUPERFAMILY | SSF140990 | FtsH protease domain-like | 483 | 681 | 6.15E-64 | IPR037219 |
| Gene3D | G3DSA:1.20.58.760 | Peptidase M41 | 481 | 676 | 2.9E-62 | IPR037219 |
| Gene3D | G3DSA:3.40.50.300 | - | 219 | 401 | 8.3E-71 | IPR027417 |
| Gene3D | G3DSA:1.10.8.60 | - | 402 | 480 | 9.6E-21 | - |
| Gene3D | G3DSA:3.30.720.210 | - | 91 | 171 | 1.8E-5 | - |
| SMART | SM00382 | AAA_5 | 264 | 403 | 2.2E-25 | IPR003593 |
| TIGRFAM | TIGR01241 | FtsH_fam: ATP-dependent metallopeptidase HflB | 177 | 671 | 4.2E-212 | IPR005936 |
| ProSitePatterns | PS00674 | AAA-protein family signature. | 371 | 389 | - | IPR003960 |
| Hamap | MF_01458 | ATP-dependent zinc metalloprotease FtsH [ftsH]. | 19 | 686 | 35.125965 | IPR005936 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G30950.1 | FtsH extracellular protease family. Metalloprotease that functions in thylakoid membrane biogenesis. Involved in the repair of PSII following damaged incurred during photoinhibition. Forms a complex with VAR1. Mutants show a variegated phenotype, which decreases during development. Transcript and protein levels increase with light intensity. | 0 |
| RefSeq | XP_017242091.1 | PREDICTED: ATP-dependent zinc metalloprotease FTSH 2, chloroplastic [Daucus carota subsp. sativus] | 0 |
| O80860 | ATP-dependent zinc metalloprotease FTSH 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FTSH2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A161WQR8 | AAA domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_009779 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 69.929733 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 80.752251 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 78.191231 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 81.917648 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 73.936592 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 72.423531 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 66.654503 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 38.532658 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 75.226379 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 71.917206 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 69.479767 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 55.099678 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 65.134796 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 69.106781 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 48.917156 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 49.295174 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 55.527298 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 113.272552 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 109.264412 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 107.015938 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 108.040039 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 45.072132 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 42.004086 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 50.623501 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 54.631104 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 113.73349 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 94.010544 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 126.759811 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 97.619179 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 199.265778 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 217.953217 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 201.328064 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 297.226929 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 136.970291 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 300.263947 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 412.999786 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 295.30719 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 350.834991 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 162.084 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 204.842804 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 314.855164 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 32.790272 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 34.135227 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 60.513367 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 73.330391 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 32.443844 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 47.134411 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 32.31852 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 27.583078 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 32.400223 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg19289, jg19953 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_11506, gene_21200 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah006893, Ah011706 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g208930 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg11988, Sbi_jg46917 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg21206 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00008028, GOSA_00009546 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl25093, Sgl30263, Sgl30264, Sgl80395, Sgl82857 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000009318, gene:ENSEOMG00000018298 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.4AG0014600, CQ.Regalona.r1.4BG0013110 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30089070, pistato.v30194620 |
| Apiaceae | Apium graveolens | 3 | Ag4G02095, Ag7G01572, Ag8G00882 |
| Arecaceae | Cocos nucifera | 3 | COCNU_07G005770, COCNU_08G007580, scaffold004312G000050 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103705127, gene-LOC103716421 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.29.V1.1, AsparagusV1_08.207.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri11G04105, Ftri11G09617, Ftri6G33508 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT1G06430.1, AT2G30950.1, AT5G15250.2 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10006971m.g.v1.0, Thhalv10016003m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g05190.v2.2, Sp4g13440.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g047630.2N, BniB03g001870.2N, BniB06g020050.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq02G2895, Ceq08G0283 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G3017 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g13510 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.1123s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g07490 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-9363 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.195, evm.TU.LG04.1680 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00008613, Pov_00020264 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb3G19529, Lb4G21847 |
| Poaceae | Echinochloa crus-galli | 6 | AH06.2622, AH06.908, BH06.2425, BH06.941, CH06.1035 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_6AG0514730, gene-QOZ80_6AG0547740 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.7HG0666580.1, HORVU.MOREX.r3.7HG0736940.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_028901 |
| Poaceae | Oryza coarctata | 4 | Oco11G005860, Oco11G014930, Oco12G005930, Oco12G015100 |
| Poaceae | Oryza sativa | 2 | LOC_Os06g12370.1, LOC_Os06g45820.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_10G096000, gene-BS78_10G223000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0103211, Pt_Chr0401297 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr02G031610, Chr05G009470, Chr10G019980, Chr11G002680 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel7E01G347500, Tel7E01G797300 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC7AG023390, gene_TRIDC7AG065720 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS7A02G188300.1, TraesCS7A02G471000.2 ... |
| Poaceae | Zea mays | 3 | Zm00001eb274190_P001, Zm00001eb279710_P001 ... |
| Poaceae | Zoysia japonica | 4 | nbis-gene-35128, nbis-gene-40527, nbis-gene-51395 ... |
| Poaceae | Zoysia macrostachya | 4 | Zma_g29394, Zma_g30971, Zma_g31627, Zma_g33231 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG06.1033, evm.TU.LG06.1411, evm.TU.LG11.229 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g28680 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.48567.1, evm.TU.Scaffold_6_RagTag.280 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-11756, nbisL1-mrna-15135, nbisL1-mrna-21003 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-2168, nbisL1-mrna-727, nbisL1-mrna-8632 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-11171, nbisL1-mrna-18672, nbisL1-mrna-236 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000006l.752, evm.TU.utg000011l.163 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013627 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-11794, nbisL1-mrna-1333, nbisL1-mrna-9791 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-17335, nbisL1-mrna-19976, nbisL1-mrna-4899 |
| Salicaceae | Populus euphratica | 5 | populus_peu24528, populus_peu24538, populus_peu27152 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132618745, gene-LOC132622252 |
| Solanaceae | Solanum chilense | 2 | SOLCI005316100, SOLCI005367300 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107009138, gene-LOC107025769 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.8244_chr05_+, gene_16959 |
| Tamaricaceae | Tamarix chinensis | 2 | TC03G1919, TC06G0682 |
| Zosteraceae | Zostera marina | 2 | Zosma03g30160.v3.1, Zosma04g25210.v3.1 |