Basic Information
Locus ID:
Ag4G02061
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Transmembrane E3 ubiquitin-protein ligase 1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 277020567 | 277023783 | + | Ag4G02061 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.02 | 13,282.26 Da | 35.60 | 91.53 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G20650.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_017241362.1 | PREDICTED: transmembrane E3 ubiquitin-protein ligase 1-like [Daucus carota subsp. sativus] | 0 |
| Q500V2 | Transmembrane E3 ubiquitin-protein ligase FLY2 OS=Arabidopsis thaliana OX=3702 GN=FLY2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A166ABJ4 | RING-type domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_009753 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 6.891707 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 11.358645 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 9.058247 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 13.497252 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 11.797517 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 10.838217 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 8.520475 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 7.767086 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 19.613316 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 20.114019 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 22.289234 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 24.396511 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 20.860491 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 19.412983 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 3.812896 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 5.630741 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 5.192533 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 10.431866 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 7.15785 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 10.896885 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 17.760324 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 10.587828 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 6.684628 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 6.468388 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 6.305207 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 19.289471 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 11.684569 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 11.197927 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 14.316435 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.60675 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 1.537325 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 1.177074 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 5.786252 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 3.354324 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 4.5126 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 1.726615 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.931619 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 1.238748 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 11.835622 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 6.296584 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 5.561545 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 20.855118 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 21.809011 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 19.480625 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 20.171839 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 14.759725 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 22.017475 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 5.284549 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 3.86272 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 6.547638 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg21349 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_21080 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah012260 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g205120 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg11775, Sbi_jg46638 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg21004 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00016852, GOSA_00016853 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl79976, Sgl82428 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000016676, gene:ENSEOMG00000036364 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.9AG0008760, CQ.Regalona.r1.9BG0015620 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30020050 |
| Apiaceae | Apium graveolens | 1 | Ag4G02061 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G012450, COCNU_14G008440 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103695890, gene-LOC103707147 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.1130.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri4G33293 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G20650.1, AT4G28370.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10002192m.g.v1.0, Thhalv10024798m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g33900.v2.2, Sp7g26330.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g011760.2N, BniB03g070300.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G2651 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G2738 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno13g01440 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g22320 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG04.1812, evm.TU.LG05.117 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00004553 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb5G28548 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.3092, BH03.3269, CH03.3462 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0568340, gene-QOZ80_7BG0599720 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0143220.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_041068 |
| Poaceae | Oryza coarctata | 2 | Oco13G008010, Oco14G008510 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g31850.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G286500 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr19G005970, Chr24G007950, Chr27G011310, Chr28G007280 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G421300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG030400, gene_TRIDC2BG034130 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G232200.2, TraesCS2B02G250800.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb322160_P003 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-38376, nbis-gene-950 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g5193, Zma_g6480 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.731, evm.TU.LG26.297 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g03440 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.1234 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-20937 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.762 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00009737 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-1293 |
| Salicaceae | Populus euphratica | 3 | populus_peu22504, populus_peu23901, populus_peu37071 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132616739, gene-LOC132623532, gene-LOC132636601 |
| Solanaceae | Solanum chilense | 2 | SOLCI003300400, SOLCI003913700 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107007657, gene-LOC107024050 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.21417_chr09_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G1505 |
| Zosteraceae | Zostera marina | 1 | Zosma03g22920.v3.1 |