halophFGD

Basic Information

Locus ID: Ag4G02046

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: strubbelig-receptor family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr4	275886935	275894825	-	Ag4G02046

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.56	87,010.13 Da	50.26	91.06	-0.21

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF08263	Leucine rich repeat N-terminal domain	37	74	2.8E-4	IPR013210
Pfam	PF07714	Protein tyrosine and serine/threonine kinase	516	785	1.5E-41	IPR001245
Pfam	PF13855	Leucine rich repeat	123	182	9.5E-8	IPR001611
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	492	785	1.5E-67	IPR011009
SUPERFAMILY	SSF52058	L domain-like	35	238	1.24E-35	-
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	591	793	2.1E-49	-
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	490	590	2.0E-27	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	37	255	1.3E-44	IPR032675
ProSiteProfiles	PS50011	Protein kinase domain profile.	513	789	33.276398	IPR000719
MobiDBLite	mobidb-lite	consensus disorder prediction	286	320	-	-

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005515 (protein binding) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K04733 (interleukin-1 receptor-associated kinase 4 [EC:2.7.11.1])

Pathway:

ko04010 (MAPK signaling pathway) map04010 (MAPK signaling pathway) map04064 (NF-kappa B signaling pathway) map04620 (Toll-like receptor signaling pathway) map04621 (NOD-like receptor signaling pathway) ko04624 (Toll and Imd signaling pathway) map04624 (Toll and Imd signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G03390.1	STRUBBELIG-receptor family 3.
RefSeq	XP_017242358.1	PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 3-like [Daucus carota subsp. sativus]
Swiss-Prot	Q6R2K3	Protein STRUBBELIG-RECEPTOR FAMILY 3 OS=Arabidopsis thaliana OX=3702 GN=SRF3 PE=1 SV=1
TrEMBL	A0A166AB84	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_009736 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	12.373496	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	10.113668	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	10.704329	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	10.577257	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	11.378756	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	6.737091	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	11.539227	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	7.171298	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	18.270966	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	19.044342	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	19.192152	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	15.571583	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	17.458471	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	13.687728	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	29.933716	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	36.164661	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	33.793209	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	60.965565	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	33.931538	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	50.7775	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	54.718033	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	26.040918	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	36.89238	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	32.249039	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	29.827726	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	36.180355	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	36.099632	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	22.305635	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	30.366264	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	6.582729		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	9.117224		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	9.696019		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	16.104389		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	14.923477		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	30.329973		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	14.333209		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	7.925725		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	10.36563		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	13.810423	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	20.458736	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	8.682227	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	49.483006	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	87.241745	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	23.101301	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	23.853102	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	42.977524	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	34.907078	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	17.520683	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	17.882526	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	19.614281	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg20305, jg22034, jg24207
Aizoaceae	Mesembryanthemum crystallinum	2	gene_21023, gene_22288
Amaranthaceae	Atriplex hortensis	2	Ah017934, Ah037351
Amaranthaceae	Beta vulgaris	1	BVRB_9g208770
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg10170, Sbi_jg26385, Sbi_jg41714, Sbi_jg48390
Amaranthaceae	Salicornia europaea	2	Seu_jg22256, Seu_jg27703
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00023972, GOSA_00024376
Amaranthaceae	Suaeda glauca	5	Sgl45802, Sgl45841, Sgl50545, Sgl79540, Sgl82008
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000012131, gene:ENSEOMG00000016172 ... gene:ENSEOMG00000035231, gene:ENSEOMG00000036937, gene:ENSEOMG00000046517, gene:ENSEOMG00000052902
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.5BG0016330, CQ.Regalona.r1.8AG0004350 ... CQ.Regalona.r1.8BG0004670, CQ.Regalona.r1.9AG0008060, CQ.Regalona.r1.9BG0014650
Anacardiaceae	Pistacia vera	2	pistato.v30019440, pistato.v30092440
Apiaceae	Apium graveolens	3	Ag3G00269, Ag4G02046, Ag7G00690
Arecaceae	Cocos nucifera	2	COCNU_04G007450, COCNU_06G009710
Arecaceae	Phoenix dactylifera	2	gene-LOC103695710, gene-LOC103721466
Asparagaceae	Asparagus officinalis	3	AsparagusV1_03.2221.V1.1, AsparagusV1_03.2807.V1.1 ... AsparagusV1_06.293.V1.1
Asteraceae	Flaveria trinervia	3	Ftri11G21130, Ftri15G29630, FtriNA01084
Brassicaceae	Arabidopsis thaliana	3	AT1G11130.1, AT2G20850.1, AT4G03390.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10006881m.g.v1.0, Thhalv10028477m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp1g09820.v2.2, Sp3g34100.v2.2, Sp6g03440.v2.2
Brassicaceae	Brassica nigra	3	BniB04g028500.2N, BniB08g038790.2N, BniB08g046200.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq01G2446, Ceq02G2560
Casuarinaceae	Casuarina glauca	2	Cgl01G2705, Cgl02G2643
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno13g00040
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate04g04820, gene.Thate05g28650, gene.Thate06g20320
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG04.1919, evm.TU.LG12.1005
Plantaginaceae	Plantago ovata	2	Pov_00005721, Pov_00039131
Plumbaginaceae	Limonium bicolor	3	Lb2G15302, Lb5G28404, Lb5G28508
Poaceae	Echinochloa crus-galli	9	AH03.3455, AH06.2550, AH07.541, BH03.3571, BH06.2354 ... BH07.668, CH03.3782, CH06.2573, CH07.547
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_2AG0103400, gene-QOZ80_2BG0156720 ... gene-QOZ80_6AG0547180, gene-QOZ80_6BG0500730, gene-QOZ80_7AG0572920, gene-QOZ80_7BG0604180
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.2HG0134500.1, HORVU.MOREX.r3.6HG0570440.1 ... HORVU.MOREX.r3.7HG0739520.1
Poaceae	Lolium multiflorum	5	gene-QYE76_020865, gene-QYE76_020903, gene-QYE76_027225 ... gene-QYE76_036424, gene-QYE76_040427
Poaceae	Oryza coarctata	6	Oco03G003790, Oco04G003730, Oco11G014480, Oco12G014630 ... Oco13G010210, Oco14G010850
Poaceae	Oryza sativa	3	LOC_Os02g07960.3, LOC_Os06g45020.1, LOC_Os07g37810.1
Poaceae	Paspalum vaginatum	3	gene-BS78_02G317100, gene-BS78_04G056100 ... gene-BS78_10G216300
Poaceae	Puccinellia tenuiflora	5	Pt_Chr0202369, Pt_Chr0206767, Pt_Chr0304424, Pt_Chr0401392 ... Pt_Chr0401409
Poaceae	Sporobolus alterniflorus	10	Chr02G031410, Chr05G009180, Chr06G034170, Chr10G019620 ... Chr11G003040, Chr15G025410, Chr19G004250, Chr24G010220, Chr27G013040, Chr28G009520
Poaceae	Thinopyrum elongatum	3	Tel2E01G383800, Tel6E01G315000, Tel7E01G833600
Poaceae	Triticum dicoccoides	6	gene_TRIDC2AG026130, gene_TRIDC2BG030590 ... gene_TRIDC6AG021420, gene_TRIDC6BG027200, gene_TRIDC7AG068500, gene_TRIDC7BG062500
Poaceae	Triticum aestivum	9	TraesCS2A02G202600.1, TraesCS2B02G229600.2 ... TraesCS2D02G213100.1, TraesCS6A02G153600.1, TraesCS6B02G181300.1, TraesCS6D02G142900.1, TraesCS7A02G491200.1, TraesCS7B02G395000.3, TraesCS7D02G477500.2
Poaceae	Zea mays	6	Zm00001eb206880_P002, Zm00001eb233540_P001 ... Zm00001eb274700_P005, Zm00001eb296610_P001, Zm00001eb324480_P001, Zm00001eb389210_P005
Poaceae	Zoysia japonica	4	nbis-gene-10601, nbis-gene-33624, nbis-gene-45916 ... nbis-gene-9835
Poaceae	Zoysia macrostachya	4	Zma_g12283, Zma_g30943, Zma_g33200, Zma_g5359
Portulacaceae	Portulaca oleracea	6	evm.TU.LG02.2020, evm.TU.LG06.994, evm.TU.LG11.264 ... evm.TU.LG16.1219, evm.TU.LG20.1199, evm.TU.LG23.272
Posidoniaceae	Posidonia oceanica	1	gene.Posoc10g00130
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.Scaffold_12_RagTag.899, evm.TU.Scaffold_13_RagTag.199 ... evm.TU.Scaffold_5_RagTag.1397, evm.TU.Scaffold_9_RagTag.1277
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-11915, nbisL1-mrna-29527, nbisL1-mrna-29911
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-15174, nbisL1-mrna-8717, nbisL1-mrna-9154
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-11062, nbisL1-mrna-20878, nbisL1-mrna-21261 ... nbisL1-mrna-21619
Rhizophoraceae	Kandelia candel	4	evm.TU.utg000003l.786, evm.TU.utg000006l.817 ... evm.TU.utg000015l.120, evm.TU.utg000027l.101
Rhizophoraceae	Kandelia obovata	4	Maker00009343, Maker00013861, Maker00015859, Maker00017474
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-10343, nbisL1-mrna-10652, nbisL1-mrna-1266 ... nbisL1-mrna-5979
Rhizophoraceae	Rhizophora mangle	5	nbisL1-mrna-15380, nbisL1-mrna-16919, nbisL1-mrna-16920 ... nbisL1-mrna-23920, nbisL1-mrna-4798
Salicaceae	Populus euphratica	5	populus_peu10124, populus_peu16896, populus_peu18244 ... populus_peu18703, populus_peu18721
Solanaceae	Lycium barbarum	4	gene-LOC132613749, gene-LOC132616574, gene-LOC132622183 ... gene-LOC132636593
Solanaceae	Solanum chilense	2	SOLCI002522900, SOLCI007288200
Solanaceae	Solanum pennellii	3	gene-LOC107007438, gene-LOC107010950, gene-LOC107026080
Tamaricaceae	Reaumuria soongarica	4	STRG.17328_chr09_-, STRG.22217_chr09_-, STRG.29950_chr10_- ... gene_14564
Tamaricaceae	Tamarix chinensis	3	TC03G0366, TC07G1249, TC07G2219
Zosteraceae	Zostera marina	2	Zosma03g32610.v3.1, Zosma05g34250.v3.1