Basic Information
Locus ID:
Ag4G02015
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 272907648 | 272911235 | + | Ag4G02015 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.37 | 60,808.88 Da | 44.80 | 94.19 | -0.15 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G22104.1 | Phototropic-responsive NPH3 family protein. | 0 |
| RefSeq | XP_017228681.1 | PREDICTED: BTB/POZ domain-containing protein At3g22104-like, partial [Daucus carota subsp. sativus] | 0 |
| Q9C5J4 | BTB/POZ domain-containing protein At3g22104 OS=Arabidopsis thaliana OX=3702 GN=At3g22104 PE=2 SV=1 | 0 | |
| TrEMBL | A0A175YBR7 | NPH3 domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_032120 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0.293231 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.353658 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0.131049 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0.049508 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.045722 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.081561 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 3.464975 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 2.89793 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 3.67574 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 3.629615 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 3.011611 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 2.432746 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 1.773915 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 2.090486 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 3.53952 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 1.242829 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 1.84236 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0.810292 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 1.376119 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0.900493 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 1.259093 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0.680181 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 1.187794 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 1.680358 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0.99593 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0.787365 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 1.025945 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.885165 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 2.766168 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 1.71057 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.254195 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 0.73768 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0.236859 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.665321 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.249615 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.066944 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 1.063211 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 1.244857 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 1.61456 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.031065 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.141573 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0.524635 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.835403 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0.568251 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 3.00599 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 4.75108 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 3.347471 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg11009, jg18966, jg21015, jg24174 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_22130, gene_25809 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah017763, Ah037434 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g207600 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg40257, Sbi_jg41856, Sbi_jg48272 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg1841, Seu_jg27611 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011416 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl41637, Sgl46433 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000018414, gene:ENSEOMG00000037366 |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.8AG0003040, CQ.Regalona.r1.8BG0003120 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30018910 |
| Apiaceae | Apium graveolens | 2 | Ag11G03328, Ag4G02015 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G010930, COCNU_14G006940 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103712628, gene-LOC103723872, gene-LOC120106667 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.910.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri12G02800, Ftri5G31611 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G22104.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10020575m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g19930.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g040800.2N, BniB07g049510.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq02G2480, Ceq04G1525 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl02G2576, Cgl04G1695 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno17g06240 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g08240, gene.Thate04g04200 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 4 | nbisL1-mrna-1003, nbisL1-mrna-11677, nbisL1-mrna-4818 ... |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG04.2008, evm.TU.LG12.1089 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00004448 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb2G14870, Lb4G22874, Lb5G28362 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.3292, BH03.3467, CH03.3688 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0571150, gene-QOZ80_7BG0602820 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0137620.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_040723 |
| Poaceae | Oryza coarctata | 2 | Oco13G009470, Oco14G010040 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g36230.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G306800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0306468, Pt_Chr0306511 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr19G004950, Chr24G009420, Chr27G012350, Chr28G008830 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G399200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG028280, gene_TRIDC2BG032000 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G213700.1, TraesCS2B02G238600.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb106510_P001, Zm00001eb323550_P002 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-10706, nbis-gene-57496, nbis-gene-775 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g5301, Zma_g6607 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.776, evm.TU.LG20.1123 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g01140 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_13_RagTag.126, evm.TU.Scaffold_5_RagTag.1466 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-11960, nbisL1-mrna-20833, nbisL1-mrna-29627 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-15347, nbisL1-mrna-2651, nbisL1-mrna-2706 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-11022, nbisL1-mrna-20827, nbisL1-mrna-21308 |
| Rhizophoraceae | Kandelia candel | 3 | evm.TU.utg000003l.818, evm.TU.utg000006l.843 ... |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00009378, Maker00012960, Maker00015273 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-10369, nbisL1-mrna-1239, nbisL1-mrna-6008 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-15421, nbisL1-mrna-16968, nbisL1-mrna-4752 |
| Salicaceae | Populus euphratica | 3 | populus_peu18338, populus_peu22697, populus_peu24128 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132618464, gene-LOC132623270 |
| Solanaceae | Solanum chilense | 2 | SOLCI001678700, SOLCI006053900 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107010655, gene-LOC107024226 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.23180_chr05_+ |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G2255, TC07G2552 |
| Zosteraceae | Zostera marina | 1 | Zosma03g31620.v3.1 |