Basic Information
Locus ID:
Ag4G01991
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
PHD finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 270543616 | 270547688 | + | Ag4G01991 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.90 | 29,249.68 Da | 52.27 | 73.99 | -0.79 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17015 | ING_plant | 17 | 114 | 1.8319E-35 | - |
| CDD | cd15505 | PHD_ING | 201 | 248 | 1.58609E-24 | - |
| Pfam | PF12998 | Inhibitor of growth proteins N-terminal histone-binding | 9 | 117 | 2.5E-17 | IPR024610 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 188 | 250 | 3.46E-20 | IPR011011 |
| Gene3D | G3DSA:6.10.140.1740 | - | 5 | 115 | 4.6E-24 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 193 | 251 | 1.9E-25 | IPR013083 |
| SMART | SM01408 | ING_2 | 9 | 117 | 5.7E-27 | IPR024610 |
| SMART | SM00249 | PHD_3 | 201 | 249 | 1.1E-10 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 199 | 251 | 8.9293 | IPR019787 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 144 | 174 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 150 | 174 | - | - |
| Coils | Coil | Coil | 24 | 44 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G54390.3 | PHD finger protein-related. ING2 encodes a member of the Inhibitor of Growth family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA. | 0 |
| RefSeq | XP_017241024.1 | PREDICTED: PHD finger protein ING2-like [Daucus carota subsp. sativus] | 0 |
| B3H615 | PHD finger protein ING2 OS=Arabidopsis thaliana OX=3702 GN=ING2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A166A9W8 | PHD finger protein ING OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_009678 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 7.818448 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 7.996979 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 4.810702 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 5.873833 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 4.611481 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 4.221859 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 3.026544 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 2.92264 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 16.433199 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 14.554684 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 13.372184 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 13.416466 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 14.905089 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 14.975422 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 9.390804 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 9.163404 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 15.542117 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 18.154222 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 20.237303 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 11.34173 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 12.593385 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 10.437669 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 9.802492 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 11.488485 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 12.011887 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 16.822584 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 18.485348 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 14.323424 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 15.888789 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 7.378218 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 15.134311 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 10.263034 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 5.654911 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 8.798215 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 6.105451 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 3.720902 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 3.333476 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 3.7673 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 18.80699 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 9.751042 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 14.953347 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 4.916384 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 9.840444 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 9.072965 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 5.982005 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 8.629622 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 8.231868 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 21.821962 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 18.510433 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 20.543941 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_18884 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah021209 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g056270 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg59576, Sbi_jg63084 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg23814 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00024360 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl02955, Sgl02956, Sgl08094, Sgl08095 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000012617, gene:ENSEOMG00000031147 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0018430, CQ.Regalona.r1.3BG0017810 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30088450 |
| Apiaceae | Apium graveolens | 3 | Ag2G01417, Ag3G02857, Ag4G01991 |
| Arecaceae | Cocos nucifera | 1 | COCNU_09G008260 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103705493 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.1710.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri11G23761, Ftri12G21961 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G54390.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10003462m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g07100.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB01g032410.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1586 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G1651 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno15g05590 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g11070 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-7832 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.2077 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb3G20591, Lb3G20593 |
| Poaceae | Echinochloa crus-galli | 3 | BH01.739, CH01.736, Contig309.93 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0216190, gene-QOZ80_3BG0261480 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0510370.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_061869 |
| Poaceae | Oryza coarctata | 2 | Oco05G023540, Oco06G024440 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g53700.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G081800 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0107153 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G005280, Chr04G028530, Chr07G027500, Chr12G037690 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G615100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG056510, gene_TRIDC5BG060570 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G386800.1, TraesCS5B02G391700.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb057160_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-15057 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g487 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.2121, evm.TU.LG15.1010 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g09940 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.410 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-3221, nbisL1-mrna-7775 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-16084 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-5443 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000012l.248 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00011462 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-8549 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-560 |
| Salicaceae | Populus euphratica | 3 | populus_peu16082, populus_peu19394, populus_peu19395 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132607551 |
| Solanaceae | Solanum chilense | 1 | SOLCI003859600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107032008 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_2739 |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G0368 |
| Zosteraceae | Zostera marina | 1 | Zosma01g07310.v3.1 |