Basic Information
Locus ID:
Ag4G01943
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Broad-Complex, Tramtrack and Bric a brac
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 267701165 | 267705014 | - | Ag4G01943 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.55 | 66,870.87 Da | 44.55 | 103.30 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18186 | BTB_POZ_ZBTB_KLHL-like | 409 | 495 | 2.1522E-15 | - |
| Pfam | PF00651 | BTB/POZ domain | 408 | 497 | 1.0E-10 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 247 | 366 | 8.63E-6 | IPR011333 |
| SUPERFAMILY | SSF54695 | POZ domain | 416 | 517 | 5.65E-12 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 389 | 547 | 5.2E-20 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 242 | 369 | 5.7E-10 | IPR011333 |
| SMART | SM00225 | BTB_4 | 409 | 521 | 1.6E-4 | IPR000210 |
| SMART | SM00225 | BTB_4 | 258 | 373 | 11.0 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 393 | 474 | 13.342936 | IPR000210 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04390.1 | BTB/POZ domain-containing protein. | 0 |
| RefSeq | XP_017243128.1 | PREDICTED: BTB/POZ domain-containing protein At1g04390 isoform X1 [Daucus carota subsp. sativus] | 0 |
| P93820 | BTB/POZ domain-containing protein At1g04390 OS=Arabidopsis thaliana OX=3702 GN=At1g04390 PE=2 SV=3 | 0 | |
| TrEMBL | A0A166A8N4 | BTB domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_009638 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 12.101356 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 6.323611 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 8.800791 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 9.264308 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 8.71004 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 8.697987 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 7.731033 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 7.681216 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 17.267519 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 16.770388 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 19.684725 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 17.488007 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 17.395256 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 17.182434 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 8.551394 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 7.944711 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 12.755672 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 10.582129 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 8.122734 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 5.594126 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 8.687128 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 12.211703 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 12.447054 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 12.342777 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 12.307932 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 12.951858 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 10.527802 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 10.216621 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 11.020351 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 5.522055 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 8.592732 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 7.331928 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 6.242741 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 6.454577 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 5.384538 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 3.755703 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 2.331378 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 1.995968 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 13.662852 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 10.420215 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 9.065138 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 7.101762 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 7.928394 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 10.399992 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 14.205283 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 5.305256 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 13.153244 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 16.27037 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 17.034279 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 16.783337 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg20575, jg20576 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_12858, gene_7833 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah033734 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg44282 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg17744 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00021418, GOSA_00021419 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl63875, Sgl68366, Sgl68367 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000022934, gene:ENSEOMG00000050595 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.2AG0009570 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30164270 |
| Apiaceae | Apium graveolens | 2 | Ag4G01943, Ag4G01944 |
| Arecaceae | Cocos nucifera | 1 | COCNU_12G000690 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103719138 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_06.40.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri7G01524 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G04390.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10006788m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g03210.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g046480.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G1586 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G1750 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g03320 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.1008 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00038060 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G14407, Lb5G26732 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.2679, BH06.2466, CH06.2768 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_6BG0501680 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0735850.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_036128, gene-QYE76_036133, gene-QYE76_036134 |
| Poaceae | Oryza coarctata | 1 | Oco12G015320 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g46240.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G228700 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0104054, Pt_Chr0401259 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr10G020170, Chr11G002440, Chr11G002460 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G786000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG064970, gene_TRIDC7BG058420 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G465100.1, TraesCS7B02G365800.2 ... |
| Poaceae | Zea mays | 2 | Zm00001eb273960_P005, Zm00001eb395680_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-40550 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG01.691, evm.TU.LG20.1532, evm.TU.LG20.1533 |
| Posidoniaceae | Posidonia oceanica | 4 | gene.Posoc08g06950, gene.Posoc08g07000, gene.Posoc08g07050 ... |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.98 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-10499 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5357 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-10675 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000006l.58 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013641 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9283 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-6913 |
| Salicaceae | Populus euphratica | 1 | populus_peu00147 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132627501 |
| Solanaceae | Solanum chilense | 1 | SOLCI003314100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107002779 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_4647 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G2321 |
| Zosteraceae | Zostera marina | 1 | Zosma03g35200.v3.1 |