Basic Information
Locus ID:
Ag4G01939
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Cleavage inducing molecular chaperone
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 267165095 | 267172499 | - | Ag4G01939 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.63 | 64,453.39 Da | 50.92 | 77.81 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06257 | DnaJ | 302 | 358 | 3.03888E-17 | IPR001623 |
| Pfam | PF14901 | Cleavage inducing molecular chaperone | 396 | 493 | 3.9E-35 | IPR032843 |
| Pfam | PF00226 | DnaJ domain | 302 | 366 | 5.3E-19 | IPR001623 |
| SUPERFAMILY | SSF46565 | Chaperone J-domain | 250 | 365 | 1.23E-18 | IPR036869 |
| Gene3D | G3DSA:1.10.287.110 | DnaJ domain | 290 | 390 | 4.2E-20 | IPR036869 |
| SMART | SM00271 | dnaj_3 | 301 | 361 | 2.1E-18 | IPR001623 |
| ProSiteProfiles | PS50076 | dnaJ domain profile. | 302 | 369 | 17.055847 | IPR001623 |
| ProSitePatterns | PS00636 | Nt-dnaJ domain signature. | 346 | 365 | - | IPR018253 |
| PRINTS | PR00625 | DnaJ domain signature | 324 | 339 | 5.5E-7 | IPR001623 |
| PRINTS | PR00625 | DnaJ domain signature | 341 | 361 | 5.5E-7 | IPR001623 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 249 | 276 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 549 | 566 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 540 | 566 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 236 | 282 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79030.1 | Chaperone DnaJ-domain superfamily protein. | 0 |
| RefSeq | XP_017243241.1 | PREDICTED: uncharacterized protein LOC108215305 isoform X2 [Daucus carota subsp. sativus] | 0 |
| Q182E7 | Chaperone protein DnaJ OS=Clostridioides difficile (strain 630) OX=272563 GN=dnaJ PE=3 SV=1 | 0 | |
| TrEMBL | A0A161XWG5 | J domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_009631 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 6.557847 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 6.685817 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 5.142273 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 7.875687 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 7.403811 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 5.752492 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 5.654674 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 4.473669 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 23.520515 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 22.01362 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 23.412886 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 23.284035 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 19.319595 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 16.543505 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 11.076427 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 8.997365 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 16.384289 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 17.487972 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 11.017099 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 12.364572 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 15.713243 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 14.999494 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 19.153172 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 15.915142 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 15.504966 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 19.583227 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 20.185131 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 16.145733 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 18.525169 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.653257 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 1.220414 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 1.062002 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 5.23434 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 5.411975 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 5.741908 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 1.963695 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.230652 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 1.086382 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 15.059048 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 11.125052 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 4.66493 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 10.018301 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 11.904562 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 28.071644 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 21.778204 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 8.807906 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 27.969728 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 14.804273 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 15.878119 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 17.469849 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg20584, jg21674 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_7668 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah007416 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg18966, Sbi_jg37421 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg5261 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00024170 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl22446, Sgl27670 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000008326, gene:ENSEOMG00000030961 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0016060, CQ.Regalona.r1.4BG0016230 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30164170 |
| Apiaceae | Apium graveolens | 3 | Ag10G01005, Ag10G02921, Ag4G01939 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103712133 |
| Asteraceae | Flaveria trinervia | 2 | Ftri14G10624, Ftri2G11896 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G16680.1, AT1G79030.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10007268m.g.v1.0, Thhalv10018356m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g14820.v2.2, Sp5g34080.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB06g042060.2N, BniB06g050600.2N, BniB06g067490.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G1603 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G1768 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno09g02950, gene.Cymno13g02620 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g19090 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.1036 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00038045 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G17679 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.4038, BH05.4142, CH05.4364 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0397840, gene-QOZ80_5BG0446400 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0429600.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_000941 |
| Poaceae | Oryza coarctata | 2 | Oco23G010290, Oco24G010140 |
| Poaceae | Oryza sativa | 1 | LOC_Os12g41820.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G145100 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0704419 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr04G018980, Chr06G019830, Chr19G007720, Chr27G008980 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G104600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG006910, gene_TRIDC5BG008270 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G045300.1, TraesCS5B02G049500.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb031650_P001, Zm00001eb136040_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-47527 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g25327, Zma_g26119 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.2195, evm.TU.LG14.1346 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc08g07260, gene.Posoc10g05350 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.78 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-20776 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-7609 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.59 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017551 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-6683 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-21619 |
| Salicaceae | Populus euphratica | 3 | populus_peu00269, populus_peu17331, populus_peu37319 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132620455 |
| Solanaceae | Solanum chilense | 1 | SOLCI004293300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026191 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.27202_chr04_+, STRG.28610_chr04_- |
| Tamaricaceae | Tamarix chinensis | 2 | TC02G2058, TC02G3671 |
| Zosteraceae | Zostera marina | 2 | Zosma05g19540.v3.1, Zosma06g04950.v3.1 |