Basic Information
Locus ID:
Ag4G01891
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 262667573 | 262682874 | + | Ag4G01891 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.14 | 398,930.38 Da | 47.65 | 97.64 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 3250 | 3610 | 5.87559E-152 | IPR000569 |
| CDD | cd14327 | UBA_atUPL1_2_like | 1296 | 1332 | 1.51116E-16 | - |
| Pfam | PF00627 | UBA/TS-N domain | 1292 | 1329 | 1.3E-6 | IPR015940 |
| Pfam | PF06012 | Domain of Unknown Function (DUF908) | 106 | 400 | 6.2E-26 | IPR010309 |
| Pfam | PF14377 | Ubiquitin binding region | 2555 | 2587 | 5.6E-12 | IPR025527 |
| Pfam | PF06025 | Domain of Unknown Function (DUF913) | 463 | 793 | 7.2E-63 | IPR010314 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 3301 | 3611 | 2.9E-93 | IPR000569 |
| Pfam | PF14377 | Ubiquitin binding region | 2517 | 2547 | 2.2E-8 | IPR025527 |
| Pfam | PF14377 | Ubiquitin binding region | 2595 | 2626 | 1.8E-6 | IPR025527 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 3234 | 3604 | 1.03E-122 | IPR035983 |
| SUPERFAMILY | SSF46934 | UBA-like | 1281 | 1342 | 1.57E-14 | IPR009060 |
| SUPERFAMILY | SSF48371 | ARM repeat | 96 | 539 | 9.36E-8 | IPR016024 |
| Gene3D | G3DSA:1.10.8.10 | - | 1290 | 1360 | 1.4E-18 | - |
| Gene3D | G3DSA:6.10.250.1630 | - | 2555 | 2589 | 1.2E-5 | - |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 3224 | 3489 | 2.3E-95 | - |
| Gene3D | G3DSA:3.30.2160.10 | Hect, E3 ligase catalytic domain | 3372 | 3456 | 2.3E-95 | - |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 3493 | 3612 | 4.5E-47 | - |
| SMART | SM00165 | uba_6 | 1293 | 1331 | 1.6E-9 | IPR015940 |
| SMART | SM00119 | hect_3 | 3269 | 3612 | 4.7E-161 | IPR000569 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 1291 | 1332 | 14.643341 | IPR015940 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 3271 | 3612 | 107.580765 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2132 | 2158 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1708 | 1732 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2017 | 2047 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1708 | 1726 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1001 | 1017 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2495 | 2519 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2128 | 2158 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2493 | 2519 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1001 | 1020 | - | - |
| Coils | Coil | Coil | 1701 | 1721 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G70320.1 | ubiquitin-protein ligase 2. encodes a ubiquitin-protein ligase-like protein containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis. | 0 |
| RefSeq | XP_017241248.1 | PREDICTED: E3 ubiquitin-protein ligase UPL1-like [Daucus carota subsp. sativus] | 0 |
| Q8H0T4 | E3 ubiquitin-protein ligase UPL2 OS=Arabidopsis thaliana OX=3702 GN=UPL2 PE=1 SV=3 | 0 | |
| TrEMBL | A0A162AH36 | HECT-type E3 ubiquitin transferase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_009555 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 20.589565 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 15.525146 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 8.36799 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 10.725161 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 12.701602 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 10.94039 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 11.656197 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 10.948547 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 17.47949 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 13.916033 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 17.456093 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 16.337858 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 21.644913 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 12.790764 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 1.890437 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 2.110909 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 2.697388 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 5.453454 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 3.787385 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 6.203935 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 7.839328 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 5.71365 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 6.479361 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 6.178351 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 5.567492 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 8.265807 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 4.058176 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 5.481668 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 6.796359 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.488889 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 2.697314 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 1.599537 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 6.811913 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 4.944719 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 7.481452 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 3.000979 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.694232 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 1.739119 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 10.236212 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 5.139454 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 3.241029 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 6.812884 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 5.45435 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 11.546976 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 9.469285 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 6.874433 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 7.994683 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 9.952884 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 11.653753 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 11.315672 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg21280, jg21614, jg22646 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_1154, gene_12129 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah009079, Ah023597 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_1g005440, BVRB_4g090620 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg18534, Sbi_jg28955, Sbi_jg2982, Sbi_jg36934 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg4811, Seu_jg6898 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00000946, GOSA_00017313 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl11833, Sgl15930, Sgl23580, Sgl23581, Sgl28781 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000011427, gene:ENSEOMG00000015904 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.1AG0009790, CQ.Regalona.r1.1BG0015970 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30042170 |
| Apiaceae | Apium graveolens | 3 | Ag10G02843, Ag2G01711, Ag4G01891 |
| Arecaceae | Cocos nucifera | 4 | COCNU_01G006310, COCNU_02G014510, COCNU_11G011420 ... |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103702442, gene-LOC103710828, gene-LOC103721479 ... |
| Asparagaceae | Asparagus officinalis | 5 | AsparagusV1_01.3576.V1.1, AsparagusV1_01.3578.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri10G09513, Ftri7G04341 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G55860.1, AT1G70320.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10011171m.g.v1.0, Thhalv10011172m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g41460.v2.2, Sp6g10940.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB04g019570.2N, BniB04g019580.2N, BniB05g058900.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq01G1493, Ceq03G1051 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl01G1657, Cgl03G1133 |
| Cymodoceaceae | Cymodocea nodosa | 3 | gene.Cymno10g07430, gene.Cymno14g08200, gene.Cymno18g05190 |
| Dunaliellaceae | Dunaliella salina | 4 | Dusal.0006s00003.v1.0, Dusal.0006s00007.v1.0 ... |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g11030 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-1803, nbisL1-mrna-9038 |
| Nitrariaceae | Nitraria sibirica | 3 | evm.TU.LG05.2045, evm.TU.LG06.244, evm.TU.LG09.1154 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00037172, Pov_00037932 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb2G11873, Lb4G23021, Lb4G23023 |
| Poaceae | Echinochloa crus-galli | 7 | AH03.1323, AH03.1324, AH05.3344, BH03.1456, BH05.3353 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_5AG0388780, gene-QOZ80_5BG0435490 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0452860.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_002392, gene-QYE76_002393 |
| Poaceae | Oryza coarctata | 4 | Oco17G000920, Oco18G000990, Oco23G005360, Oco24G005230 |
| Poaceae | Oryza sativa | 2 | LOC_Os09g07900.1, LOC_Os12g24080.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_K086400 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr04G014830, Chr06G015240, Chr10G003670, Chr11G015210 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G211200 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC2AG036140, gene_TRIDC5AG020600 ... |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G121600.1, TraesCS5B02G112800.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb094520_P002, Zm00001eb133420_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-12544 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g25774 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG02.609, evm.TU.LG04.1615, evm.TU.LG09.2070 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g08450, gene.Posoc06g13710 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_7_RagTag.64, evm.TU.Scaffold_7_RagTag.898 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-19367, nbisL1-mrna-19688, nbisL1-mrna-9401 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-4015, nbisL1-mrna-4933, nbisL1-mrna-9737 |
| Rhizophoraceae | Ceriops zippeliana | 6 | nbisL1-mrna-20564, nbisL1-mrna-20565, nbisL1-mrna-22342 ... |
| Rhizophoraceae | Kandelia candel | 3 | evm.TU.utg000002l.693, evm.TU.utg000018l.231 ... |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00003277, Maker00010644, Maker00010697 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-11491, nbisL1-mrna-13070, nbisL1-mrna-7997 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-10148, nbisL1-mrna-17060, nbisL1-mrna-22585 |
| Salicaceae | Populus euphratica | 5 | populus_peu00891, populus_peu00892, populus_peu00893 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132616848, gene-LOC132627653 |
| Solanaceae | Solanum chilense | 2 | SOLCI000395700, SOLCI002308300 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107017094, gene-LOC107025338 |
| Tamaricaceae | Reaumuria soongarica | 3 | gene_13076, gene_17872, gene_3887 |
| Tamaricaceae | Tamarix chinensis | 3 | TC05G2598, TC06G0522, TC10G2282 |
| Zosteraceae | Zostera marina | 2 | Zosma03g00180.v3.1, Zosma05g30720.v3.1 |