Basic Information
Locus ID:
Ag4G01884
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Leucine rich repeat N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 261913814 | 261917419 | - | Ag4G01884 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.50 | 108,472.47 Da | 40.11 | 95.27 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 480 | 539 | 6.6E-7 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 668 | 949 | 1.5E-44 | IPR000719 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 28 | 67 | 4.3E-5 | IPR013210 |
| Pfam | PF00560 | Leucine Rich Repeat | 193 | 215 | 1.4 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 552 | 571 | 1.0 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 26 | 194 | 6.46E-23 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 189 | 424 | 9.86E-51 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 412 | 570 | 4.25E-37 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 659 | 952 | 1.75E-72 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 184 | 285 | 3.9E-28 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 358 | 470 | 1.3E-26 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 650 | 757 | 3.4E-18 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 471 | 596 | 2.3E-31 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 758 | 969 | 9.5E-60 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 27 | 183 | 2.2E-34 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 286 | 357 | 1.4E-16 | IPR032675 |
| SMART | SM00220 | serkin_6 | 666 | 951 | 3.3E-32 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 666 | 960 | 37.558998 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 120 | 142 | 7.642649 | IPR001611 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 802 | 814 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 672 | 694 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G09970.1 | Leucine-rich receptor-like protein kinase family protein. RLK7 belongs to a leucine-rich repeat class of receptor-likekinase (LRR-RLKs). It is involved in the control of germination speed and the tolerance to oxidant stress. | 0 |
| RefSeq | XP_017242346.1 | PREDICTED: receptor-like protein kinase HAIKU2 [Daucus carota subsp. sativus] | 0 |
| F4I2N7 | Receptor-like protein kinase 7 OS=Arabidopsis thaliana OX=3702 GN=RLK7 PE=1 SV=1 | 0 | |
| TrEMBL | A0A162AGP1 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_009547 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 11.146081 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 17.675968 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 10.644629 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 13.562385 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 13.292679 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 15.586481 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 10.058083 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 7.505125 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 36.130188 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 33.589207 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 33.08461 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 20.967794 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 22.224201 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 16.553896 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 62.246178 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 53.152622 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 38.36377 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 86.970207 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 54.056431 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 84.632858 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 85.167465 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 45.782722 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 42.25753 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 34.941181 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 53.250027 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 45.437359 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 43.862526 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 45.519577 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 44.099918 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 7.076854 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 7.711644 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 5.760687 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 32.540337 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 15.620176 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 26.446667 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 18.135727 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 8.379608 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 8.903891 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 8.468904 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 25.58415 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 13.225834 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 37.76569 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 65.455612 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 197.711655 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 120.742813 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 50.742401 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 123.490067 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 16.987886 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 15.093178 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 19.29561 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg10766, jg19348, jg6162 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_8825 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah036492 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg39544, Sbi_jg54770 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg14789 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00028522 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl12682, Sgl17922 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000018473, gene:ENSEOMG00000036411 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0020330, CQ.Regalona.r1.1BG0004780 |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30042510, pistato.v30099080, pistato.v30103470 |
| Apiaceae | Apium graveolens | 4 | Ag1G00661, Ag2G00472, Ag4G01884, Ag9G00250 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G019300 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103705762, gene-LOC120104079 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.721.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri14G21189, Ftri16G32708, Ftri4G21841 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G09970.2, AT3G19700.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10006696m.g.v1.0, Thhalv10022054m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g08630.v2.2, Sp3g17740.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g005110.2N, BniB03g003650.2N, BniB07g051070.2N |
| Casuarinaceae | Casuarina equisetifolia | 3 | Ceq03G2730, Ceq03G2731, Ceq09G0507 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl03G2871, Cgl03G2872, Cgl09G0547 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g14310 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g31570, gene.Thate06g14080 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-1179, nbisL1-mrna-12394 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG06.275, evm.TU.LG08.683 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00037137 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb4G23386, Lb7G32874 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.4194, BH05.4275, CH05.4504 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_5AG0399330, gene-QOZ80_5AG0399340 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0088480.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_000162, gene-QYE76_000163 |
| Poaceae | Oryza coarctata | 2 | Oco23G011120, Oco24G010930 |
| Poaceae | Oryza sativa | 2 | LOC_Os11g33380.1, LOC_Os12g43640.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G166000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0704392, Pt_Chr0704400 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr04G019800, Chr06G020720, Chr19G007130 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G031200 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC5BG002040 |
| Poaceae | Triticum aestivum | 5 | TraesCS1A02G103900.1.cds1, TraesCS1B02G381300.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb134290_P001 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g25399, Zma_g26192 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG12.1733, evm.TU.LG12.1734 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g26960 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_2_RagTag.448, evm.TU.Scaffold_7_RagTag.878 ... |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-19335, nbisL1-mrna-4750, nbisL1-mrna-9380 ... |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-10356, nbisL1-mrna-1060, nbisL1-mrna-2021 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-20586, nbisL1-mrna-6707, nbisL1-mrna-9718 |
| Rhizophoraceae | Kandelia candel | 3 | add.evm.TU.utg000002l.264, add.evm.TU.utg000018l.92 ... |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00003231, Maker00004916, Maker00010864 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-11476, nbisL1-mrna-17745, nbisL1-mrna-22020 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-10125, nbisL1-mrna-16530, nbisL1-mrna-17078 |
| Salicaceae | Populus euphratica | 2 | populus_peu32166, populus_peu36155 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132598892, gene-LOC132627686 |
| Solanaceae | Solanum chilense | 2 | SOLCI001114500, SOLCI005026100 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107001432, gene-LOC107004758 |
| Tamaricaceae | Reaumuria soongarica | 3 | STRG.28054_chr04_+, gene_1807, gene_4747 |
| Tamaricaceae | Tamarix chinensis | 2 | TC04G2766, TC10G2332 |
| Zosteraceae | Zostera marina | 1 | Zosma05g29130.v3.1 |