Basic Information
Locus ID:
Ag4G01883
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 261899307 | 261902923 | - | Ag4G01883 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.36 | 105,807.27 Da | 35.29 | 100.40 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 651 | 924 | 2.6E-47 | IPR000719 |
| Pfam | PF00560 | Leucine Rich Repeat | 140 | 161 | 1.4 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 58 | 347 | 4.55E-53 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 253 | 546 | 1.8E-47 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 637 | 926 | 4.32E-74 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 24 | 298 | 2.3E-66 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 630 | 732 | 1.6E-20 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 733 | 950 | 6.3E-61 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 299 | 569 | 7.7E-67 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 284 | 307 | 43.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 236 | 260 | 23.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 500 | 524 | 34.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 476 | 499 | 79.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 648 | 933 | 2.3E-36 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 91 | 119 | 51.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 138 | 162 | 120.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 648 | 927 | 38.378769 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 776 | 788 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 940 | 959 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G49660.1 | Leucine-rich repeat transmembrane protein kinase family protein. | 0 |
| RefSeq | XP_017242503.1 | PREDICTED: receptor-like protein kinase HSL1 [Daucus carota subsp. sativus] | 0 |
| Q9FGL5 | Receptor protein-tyrosine kinase CEPR1 OS=Arabidopsis thaliana OX=3702 GN=CEPR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A166A6E8 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_009546 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 6.933815 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 6.709136 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 5.331651 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 7.530465 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 7.378854 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 4.491886 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 4.750111 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 1.453923 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 17.024866 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 18.000116 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 19.091658 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 16.254934 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 19.070379 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 15.169205 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 1.45707 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 4.561234 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 21.194082 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 14.018939 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 7.419548 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 19.726151 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 21.684149 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 103.062263 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 97.701225 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 69.109535 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 74.551079 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 37.910568 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 21.119825 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 45.784702 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 29.492527 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 10.377544 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 6.797279 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 4.506261 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 16.622478 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 17.399801 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 12.964643 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 7.722182 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 6.308077 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 6.622602 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 8.563312 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 32.822426 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 31.883928 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 2.617646 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 5.729779 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 51.268829 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 88.851013 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 3.313 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 58.397953 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 16.375109 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 24.637442 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 24.381071 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg10765, jg22673 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_8826, gene_8827 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah036499, Ah036501 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg39569, Sbi_jg54766, Sbi_jg54767 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg14767 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00028524 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl12644, Sgl12660, Sgl17912 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000018338, gene:ENSEOMG00000033609 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.1AG0020340, CQ.Regalona.r1.1AG0020350 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30042520, pistato.v30046880 |
| Apiaceae | Apium graveolens | 1 | Ag4G01883 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G019310 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103705713 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_03.725.V1.1, AsparagusV1_03.726.V1.1 ... |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G24679 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G49660.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012576m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g10770.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g026470.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2727 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2869 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g14320 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g31550 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-1180, nbisL1-mrna-12398 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.276 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00037128 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb4G23384, Lb7G32875 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0399350, gene-QOZ80_5BG0448040 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0421040.1.CDS1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_000148, gene-QYE76_000409 |
| Poaceae | Oryza coarctata | 2 | Oco23G011130, Oco24G010950 |
| Poaceae | Oryza sativa | 1 | LOC_Os12g43660.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G166200 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr04G019810, Chr06G020740 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G029500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG002150, gene_TRIDC5BG001960 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G013100.1, TraesCS5B02G011300.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb032940_P001, Zm00001eb134240_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-44428, nbis-gene-47427 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g25400, Zma_g26193 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG12.1735, evm.TU.LG12.1736, evm.TU.LG12.1737 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g26970 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.857 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-9377 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-7524 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-20587 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000018l.246 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003363 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-21288 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-17079 |
| Salicaceae | Populus euphratica | 1 | populus_peu32123 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132609148, gene-LOC132627688 |
| Solanaceae | Solanum chilense | 1 | SOLCI005026300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107017804 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.31167_chr11_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G2765 |
| Zosteraceae | Zostera marina | 1 | Zosma06g02810.v3.1 |