halophFGD

Basic Information

Locus ID: Ag4G01849

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Prolyl 4-hydroxylase alpha subunit homologues.

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr4	257295349	257301567	-	Ag4G01849

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.30	34,256.88 Da	43.68	83.92	-0.37

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF13640	2OG-Fe(II) oxygenase superfamily	176	280	1.7E-14	IPR044862
Gene3D	G3DSA:2.60.120.620	q2cbj1_9rhob like domain	89	282	6.2E-70	-
SMART	SM00702	p4hc	96	289	1.5E-48	IPR006620
ProSiteProfiles	PS51471	Fe(2+) 2-oxoglutarate dioxygenase domain profile.	172	301	9.470213	IPR005123

Gene Ontology

Molecular Function:

GO:0005506 (iron ion binding) GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen) GO:0031418 (L-ascorbic acid binding)

KEGG Pathway

KO Term:

K00472 (prolyl 4-hydroxylase [EC:1.14.11.2])

Pathway:

ko00330 (Arginine and proline metabolism) map00330 (Arginine and proline metabolism) ko01100 (Metabolic pathways) map01100 (Metabolic pathways)

Reaction:

R01252 (L-Proline + 2-Oxoglutarate + Oxygen <=> Hydroxyproline + Succinate + CO2)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G20270.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein.
RefSeq	XP_017241413.1	PREDICTED: probable prolyl 4-hydroxylase 3 [Daucus carota subsp. sativus]
Swiss-Prot	Q9LN20	Probable prolyl 4-hydroxylase 3 OS=Arabidopsis thaliana OX=3702 GN=P4H3 PE=2 SV=1
TrEMBL	A0A166A594	Fe2OG dioxygenase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_009511 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	19.266014	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	9.674825	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	14.008817	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	12.173815	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	13.985636	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	10.962713	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	12.955955	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	7.600883	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	11.301123	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	14.063319	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	14.941933	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	15.677279	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	13.130331	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	12.859984	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	25.646078	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	27.679422	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	24.314533	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	23.843117	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	20.850847	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	20.234562	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	23.469524	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	21.332138	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	21.394201	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	25.94062	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	22.528439	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	23.648933	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	26.815643	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	16.980299	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	24.556822	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	4.065645		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	5.736878		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	4.634162		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	10.737844		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	13.64611		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	12.138075		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	5.494749		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	2.459025		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	5.232633		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	6.146511	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	6.945596	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	6.108769	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	22.715933	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	18.000509	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	12.006853	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	12.688588	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	26.541744	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	16.225023	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	20.742855	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	22.124865	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	26.940001	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	6	jg11708, jg11714, jg11716, jg19923, jg30922, jg6377
Aizoaceae	Mesembryanthemum crystallinum	2	gene_23647, gene_8716
Amaranthaceae	Atriplex hortensis	2	Ah012856, Ah036098
Amaranthaceae	Beta vulgaris	1	BVRB_6g152670
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg39980, Sbi_jg42362, Sbi_jg44946, Sbi_jg55310
Amaranthaceae	Salicornia europaea	2	Seu_jg14356, Seu_jg27192
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00002321, GOSA_00014111
Amaranthaceae	Suaeda glauca	5	Sgl12136, Sgl17422, Sgl31902, Sgl37180, Sgl37181
Amaranthaceae	Chenopodium album	5	gene:ENSEOMG00000000354, gene:ENSEOMG00000006211 ... gene:ENSEOMG00000017994, gene:ENSEOMG00000035029, gene:ENSEOMG00000048116
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.1AG0021870, CQ.Regalona.r1.1BG0002510 ... CQ.Regalona.r1.6AG0007820, CQ.Regalona.r1.6BG0008550
Anacardiaceae	Pistacia vera	3	pistato.v30048920, pistato.v30210710, pistato.v30211560
Apiaceae	Apium graveolens	2	Ag3G02081, Ag4G01849
Arecaceae	Cocos nucifera	3	COCNU_07G012760, COCNU_08G009990, COCNU_09G007040
Arecaceae	Phoenix dactylifera	4	gene-LOC103698114, gene-LOC103716229, gene-LOC103721115 ... gene-LOC120103916
Asparagaceae	Asparagus officinalis	2	AsparagusV1_01.931.V1.1, AsparagusV1_07.2131.V1.1
Asteraceae	Flaveria trinervia	4	Ftri17G16150, Ftri17G22846, Ftri18G21107, Ftri18G32133
Brassicaceae	Arabidopsis thaliana	4	AT1G20270.1, AT2G17720.1, AT4G35810.1, AT5G66060.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10004714m.g.v1.0, Thhalv10010038m.g.v1.0 ... Thhalv10022796m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp1g18020.v2.2, Sp2g30620.v2.2, Sp3g31130.v2.2 ... Sp7g33600.v2.2
Brassicaceae	Brassica nigra	7	BniB02g014060.2N, BniB03g008600.2N, BniB03g013270.2N ... BniB03g065860.2N, BniB04g034960.2N, BniB07g009380.2N, BniB07g044610.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq03G0827
Casuarinaceae	Casuarina glauca	2	Cgl03G0901, Cgl06G0115
Cymodoceaceae	Cymodocea nodosa	4	gene.Cymno02g11340, gene.Cymno10g08080, gene.Cymno11g10740 ... gene.Cymno14g07770
Hydrocharitaceae	Thalassia testudinum	4	gene.Thate02g12810, gene.Thate02g27150, gene.Thate05g02080 ... gene.Thate07g01000
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-12496, nbisL1-mrna-1387
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG02.2822, evm.TU.LG06.158
Plantaginaceae	Plantago ovata	3	Pov_00020376, Pov_00034504, Pov_00036971
Plumbaginaceae	Limonium bicolor	3	Lb0G37420, Lb1G06112, Lb8G36368
Poaceae	Echinochloa crus-galli	6	AH01.1704, AH07.4015, BH01.1906, BH07.3829, CH01.2013 ... CH07.3889
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_2AG0112430, gene-QOZ80_2AG0151290 ... gene-QOZ80_2BG0165760, gene-QOZ80_2BG0206700
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.1HG0047080.1, HORVU.MOREX.r3.6HG0632360.1
Poaceae	Lolium multiflorum	2	gene-QYE76_011812, gene-QYE76_019080
Poaceae	Oryza coarctata	4	Oco03G025970, Oco04G026460, Oco19G007080, Oco20G007060
Poaceae	Oryza sativa	2	LOC_Os02g58070.1, LOC_Os10g35470.1
Poaceae	Paspalum vaginatum	2	gene-BS78_01G188000, gene-BS78_04G327100
Poaceae	Puccinellia tenuiflora	3	Pt_Chr0502758, Pt_Chr0604571, Pt_Chr0604787
Poaceae	Sporobolus alterniflorus	7	Chr06G030230, Chr09G001920, Chr09G026810, Chr13G000320 ... Chr15G021570, Chr16G012310, Chr22G005190
Poaceae	Thinopyrum elongatum	3	Tel1E01G306300, Tel4E01G473200, Tel6E01G754900
Poaceae	Triticum dicoccoides	4	gene_TRIDC1AG026030, gene_TRIDC1BG030960 ... gene_TRIDC6AG060060, gene_TRIDC6BG073560
Poaceae	Triticum aestivum	6	TraesCS1A02G170900.1, TraesCS1B02G186400.1 ... TraesCS1D02G168600.1, TraesCS6A02G410600.2, TraesCS6B02G456400.1, TraesCS6D02G393500.1
Poaceae	Zea mays	3	Zm00001eb044630_P003, Zm00001eb190810_P001 ... Zm00001eb259330_P001
Poaceae	Zoysia japonica	2	nbis-gene-39750, nbis-gene-43954
Poaceae	Zoysia macrostachya	3	Zma_g12690, Zma_g15218, Zma_g17466
Portulacaceae	Portulaca oleracea	7	evm.TU.LG05.1015, evm.TU.LG07.988, evm.TU.LG12.1754 ... evm.TU.LG13.982, evm.TU.LG15.912, evm.TU.LG21.642, evm.TU.LG25.321
Posidoniaceae	Posidonia oceanica	6	gene.Posoc01g21680, gene.Posoc02g10230, gene.Posoc03g22040 ... gene.Posoc06g14840, gene.Posoc08g05420, gene.Posoc09g02180
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_3_RagTag.62, evm.TU.Scaffold_6_RagTag.2150 ... evm.TU.Scaffold_7_RagTag.407
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-16980, nbisL1-mrna-18867, nbisL1-mrna-202 ... nbisL1-mrna-86
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-13379, nbisL1-mrna-14349, nbisL1-mrna-5605
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-11677, nbisL1-mrna-13066, nbisL1-mrna-5865
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000002l.467, evm.TU.utg000011l.1321 ... evm.TU.utg000019l.1179
Rhizophoraceae	Kandelia obovata	3	Maker00006817, Maker00008273, Maker00011699
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-15695, nbisL1-mrna-6586, nbisL1-mrna-8771
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-20085, nbisL1-mrna-2460, nbisL1-mrna-2964
Salicaceae	Populus euphratica	5	populus_peu14078, populus_peu15410, populus_peu23031 ... populus_peu31177, populus_peu33052
Solanaceae	Lycium barbarum	3	gene-LOC132618050, gene-LOC132621911, gene-LOC132628152
Solanaceae	Solanum chilense	2	SOLCI002961300, SOLCI006697500
Solanaceae	Solanum pennellii	3	gene-LOC107008923, gene-LOC107012693, gene-LOC107018055
Tamaricaceae	Reaumuria soongarica	3	gene_1853, gene_2343, gene_3083
Tamaricaceae	Tamarix chinensis	2	TC01G2465, TC04G2926
Zosteraceae	Zostera marina	3	Zosma03g21400.v3.1, Zosma04g04680.v3.1, Zosma04g04690.v3.1