Basic Information
Locus ID:
Ag4G01813
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Leucine rich repeat N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 253132741 | 253136934 | - | Ag4G01813 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.22 | 99,295.27 Da | 37.80 | 106.07 | 0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 641 | 907 | 3.94198E-86 | - |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 28 | 67 | 2.6E-12 | IPR013210 |
| Pfam | PF00560 | Leucine Rich Repeat | 289 | 311 | 0.28 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 337 | 396 | 7.0E-9 | IPR001611 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 637 | 903 | 1.1E-38 | IPR001245 |
| Pfam | PF13855 | Leucine rich repeat | 409 | 468 | 1.3E-9 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 146 | 203 | 6.3E-7 | IPR001611 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 638 | 907 | 2.29E-65 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 50 | 305 | 3.49E-53 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 268 | 518 | 3.61E-62 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 712 | 916 | 3.0E-50 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 627 | 711 | 8.0E-20 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 28 | 308 | 5.5E-76 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 309 | 529 | 7.5E-69 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 431 | 454 | 330.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 217 | 239 | 370.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 94 | 117 | 180.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 118 | 142 | 130.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 479 | 503 | 130.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 287 | 311 | 47.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 455 | 478 | 38.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 383 | 407 | 110.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 191 | 215 | 15.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 635 | 907 | 34.237507 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 641 | 664 | - | IPR017441 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 455 | 468 | 6.3E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 242 | 255 | 6.3E-5 | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G56370.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_017242994.1 | PREDICTED: probable LRR receptor-like serine/threonine-protein kinase IRK [Daucus carota subsp. sativus] | 0 |
| Q9LY03 | Probable LRR receptor-like serine/threonine-protein kinase IRK OS=Arabidopsis thaliana OX=3702 GN=IRK PE=1 SV=1 | 0 | |
| TrEMBL | A0A166A400 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_009472 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 4.725224 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 2.676457 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 1.41998 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 2.10801 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 2.486209 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 1.83506 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 1.410478 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.788742 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 25.241068 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 22.825439 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 24.431049 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 23.174227 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 17.307949 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 12.946315 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.47569 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0.749615 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 1.817583 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 2.730837 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 1.571894 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 2.10342 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 2.326379 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 7.249932 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 6.716312 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 6.058331 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 5.217761 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 3.158428 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 4.16972 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 2.960276 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 3.316512 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.481876 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 1.724746 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.975638 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.918886 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 6.795783 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 1.061138 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.41893 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.333855 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.139228 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 5.98775 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 1.512436 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.35248 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.883229 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.375268 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 1.066917 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 1.029366 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 1.44664 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 1.710665 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 14.31112 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 14.288241 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 14.604007 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 6 | jg10080, jg14189, jg14694, jg14695, jg3163, jg3164 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_14589, gene_17093 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah031537, Ah032098 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_2g038950, BVRB_7g156940 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg2159, Sbi_jg30122, Sbi_jg34349, Sbi_jg43577 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg18325, Seu_jg2615 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00004088, GOSA_00005874 |
| Amaranthaceae | Suaeda glauca | 6 | Sgl66077, Sgl70392, Sgl70447, Sgl70448, Sgl71118, Sgl74701 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000005558, gene:ENSEOMG00000014650 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.2AG0002900, CQ.Regalona.r1.2BG0004080 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30178080, pistato.v30269220 |
| Apiaceae | Apium graveolens | 2 | Ag10G02720, Ag4G01813 |
| Arecaceae | Cocos nucifera | 4 | COCNU_04G004540, COCNU_04G012590, COCNU_12G006210 ... |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103702137, gene-LOC103706252, gene-LOC103708906 ... |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_02.370.V1.1, AsparagusV1_02.371.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri12G32005, Ftri17G07980 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G56370.1, AT5G01890.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10005773m.g.v1.0, Thhalv10012579m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp5g06140.v2.2, Sp6g41130.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB05g031920.2N, BniB07g008290.2N, BniB08g070980.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq02G0024, Ceq08G0886 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl02G0026, Cgl08G0903 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g16700 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g03710 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 4 | nbisL1-mrna-3724, nbisL1-mrna-4311, nbisL1-mrna-5366 ... |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.867, evm.TU.LG02.1691 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00002594, Pov_00011610, Pov_00040662 |
| Plumbaginaceae | Limonium bicolor | 6 | Lb0G37369, Lb1G06279, Lb2G09546, Lb2G09551, Lb2G14487 ... |
| Poaceae | Echinochloa crus-galli | 9 | AH01.3731, AH02.3702, AH05.2027, BH01.4080, BH02.3278 ... |
| Poaceae | Eleusine coracana subsp. coracana | 6 | gene-QOZ80_1AG0038090, gene-QOZ80_1BG0088090 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0297580.1, HORVU.MOREX.r3.4HG0378630.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_055672, gene-QYE76_068066 |
| Poaceae | Oryza coarctata | 6 | Oco01G023490, Oco02G024260, Oco05G012920, Oco06G013550 ... |
| Poaceae | Oryza sativa | 4 | LOC_Os01g60670.1, LOC_Os02g51050.1, LOC_Os03g21730.1 ... |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_01G362700, gene-BS78_03G318900 ... |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0102621, Pt_Chr0300669, Pt_Chr0601817, Pt_Chr0601845 |
| Poaceae | Sporobolus alterniflorus | 10 | Chr01G034110, Chr02G006160, Chr03G018900, Chr04G010800 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G550400, Tel4E01G308200 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC3AG049630, gene_TRIDC3BG055880 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS3A02G344300.1, TraesCS3B02G376200.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb016040_P001, Zm00001eb149530_P001 ... |
| Poaceae | Zoysia japonica | 5 | nbis-gene-11566, nbis-gene-14252, nbis-gene-1665 ... |
| Poaceae | Zoysia macrostachya | 3 | Zma_g1256, Zma_g26999, Zma_g8898 |
| Portulacaceae | Portulaca oleracea | 9 | evm.TU.LG02.2912, evm.TU.LG03.2075, evm.TU.LG05.1192 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g33220 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_11_RagTag.300, evm.TU.Scaffold_1_RagTag.1921 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-14121, nbisL1-mrna-5687 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-12669, nbisL1-mrna-9494 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-14267, nbisL1-mrna-3611 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000005l.176, evm.TU.utg000016l.762 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00010232, Maker00016848 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-423, nbisL1-mrna-4892 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-13854, nbisL1-mrna-18914 |
| Salicaceae | Populus euphratica | 4 | populus_peu11513, populus_peu16359, populus_peu19152 ... |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132611247, gene-LOC132631077, gene-LOC132638162 |
| Solanaceae | Solanum chilense | 3 | SOLCI002136200, SOLCI003555600, SOLCI003717200 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107023271, gene-LOC107023573, gene-LOC107031799 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.1656_chr01_+, gene_62 |
| Tamaricaceae | Tamarix chinensis | 3 | TC02G0121, TC02G2367, TC07G0983 |
| Zosteraceae | Zostera marina | 3 | Zosma01g19390.v3.1, Zosma02g22180.v3.1, Zosma06g13900.v3.1 |