Basic Information
Locus ID:
Ag4G01797
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
FHA domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 249989975 | 249991817 | - | Ag4G01797 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.41 | 35,306.59 Da | 40.71 | 78.89 | -0.80 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Coils | Coil | Coil | 163 | 183 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_017220651.1 | PREDICTED: FHA domain-containing protein At4g14490-like [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A175YJV0 | FHA domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_028835 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 2.315679 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 1.286496 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 1.255533 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 1.539467 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 2.248573 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 1.447166 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 1.407202 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.871586 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 3.618086 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 4.026542 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 4.149842 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 4.23888 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 3.913938 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 4.22012 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.149999 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0.139308 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0.412758 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 1.090826 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0.433616 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0.703905 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0.858585 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 1.079206 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 1.33128 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 1.558588 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 1.617631 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0.938666 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0.879401 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0.833034 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0.9573 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.081619 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.497066 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.590522 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 1.683405 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 2.726522 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0.774277 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 1.076012 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.29573 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.559469 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 1.286466 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.20786 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.076557 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 2.217449 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.70924 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 2.273405 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 2.350962 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 1.175802 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 2.344448 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 2.717461 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 2.984676 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 1.706388 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg11110, jg26665, jg26666 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_3079 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g158030 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg2267, Sbi_jg34230 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg2488 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00005992 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl70993, Sgl74543, Sgl74584 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000014841, gene:ENSEOMG00000030523 ... |
| Amaranthaceae | Chenopodium quinoa | 5 | CQ.Regalona.r1.2AG0004150, CQ.Regalona.r1.2BG0005790 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30235330 |
| Apiaceae | Apium graveolens | 2 | Ag4G01797, Ag5G02579 |
| Arecaceae | Cocos nucifera | 2 | COCNU_04G010860, COCNU_16G004630 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103701139, gene-LOC103720656 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.1273.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri1G21630 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G02400.1, AT4G14490.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10020728m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g01440.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB01g061140.2N, BniB01g061150.2N, BniB04g062430.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G1151 |
| Casuarinaceae | Casuarina glauca | 4 | Cgl04G2294, Cgl07G1208, Cgl08G1617, CglSG0066 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g13720 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0745s00009.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate05g00920, gene.Thate09g08870 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 3 | nbisL1-mrna-12090, nbisL1-mrna-12091, nbisL1-mrna-5007 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.859 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00015667, Pov_00020983, Pov_00037551 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G03106 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.740, BH01.886, CH01.899 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0217840, gene-QOZ80_3BG0263080 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0253450.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_030214, gene-QYE76_052122, gene-QYE76_052137 ... |
| Poaceae | Oryza coarctata | 2 | Oco05G022460, Oco06G023330 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g51870.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G230700 |
| Poaceae | Puccinellia tenuiflora | 5 | Pt_Chr0403662, Pt_Chr0403670, Pt_Chr0604050, Pt_Chr0604053 ... |
| Poaceae | Sporobolus alterniflorus | 5 | Chr01G006310, Chr01G006350, Chr09G017530, Chr09G017540 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G453400 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC3AG024200, gene_TRIDC3AG024270 ... |
| Poaceae | Triticum aestivum | 7 | TraesCS3A02G174400.1, TraesCS3B02G204600.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb056120_P001, Zm00001eb215540_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-14939, nbis-gene-16021 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g569 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG16.573 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc02g33690, gene.Posoc04g21000 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.1244 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-1570 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-818 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-2505 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000019l.208 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00001731 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-19259 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-1946 |
| Salicaceae | Populus euphratica | 1 | populus_peu21507 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132635133 |
| Solanaceae | Solanum chilense | 1 | SOLCI002439200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107028984 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.14895_chr08_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G1209 |
| Zosteraceae | Zostera marina | 1 | Zosma04g16820.v3.1 |