Basic Information
Locus ID:
Ag4G01788
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
zinc transporter
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 248496232 | 248501001 | - | Ag4G01788 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.42 | 36,933.41 Da | 28.83 | 108.37 | 0.59 |
Protein Domain:
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55910.1 | zinc transporter 11 precursor. member of Putative zinc transporter ZIP2 - like family | 0 |
| RefSeq | XP_017237415.1 | PREDICTED: zinc transporter 11-like [Daucus carota subsp. sativus] | 0 |
| Q94EG9 | Zinc transporter 11 OS=Arabidopsis thaliana OX=3702 GN=ZIP11 PE=2 SV=1 | 0 | |
| TrEMBL | A0A166A2Q6 | Zinc/iron permease OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_009429 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 18.955906 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 17.03828 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 23.16923 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 23.151648 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 21.990204 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 28.233337 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 21.395102 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 12.150019 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 72.600464 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 75.5522 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 80.733902 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 51.595665 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 72.828018 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 74.586182 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 51.873081 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 41.629398 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 35.911194 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 88.821579 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 69.056679 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 148.56633 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 195.521301 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 28.385481 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 27.259394 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 22.354254 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 50.085476 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 45.78989 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 37.486927 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 77.476021 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 40.800289 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 93.731186 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 50.791153 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 55.894253 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 199.095566 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 114.651924 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 188.460541 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 188.071747 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 97.599075 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 150.275238 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 34.20813 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 126.107475 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 75.966408 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 211.386398 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 164.089188 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 148.234055 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 151.585648 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 192.594589 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 121.089775 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 16.712982 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 13.543161 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 18.791388 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg20173, jg8347 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_12146, gene_6979 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah009026, Ah027992 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_4g090110, BVRB_7g173510 |
| Amaranthaceae | Salicornia bigelovii | 5 | Sbi_jg1713, Sbi_jg1716, Sbi_jg18485, Sbi_jg34834 ... |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg3031, Seu_jg4770 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00003232, GOSA_00017356 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl23535, Sgl28664, Sgl73065, Sgl76607 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000007058, gene:ENSEOMG00000012092 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4BG0025650, CQ.Regalona.r1.7AG0003170 |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30063030, pistato.v30152770, pistato.v30155030 |
| Apiaceae | Apium graveolens | 3 | Ag11G04199, Ag2G00097, Ag4G01788 |
| Arecaceae | Cocos nucifera | 5 | COCNU_04G015750, COCNU_04G015760, COCNU_04G015770 ... |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103707581, gene-LOC103715657, gene-LOC120110148 ... |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_07.151.V1.1, AsparagusV1_07.152.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri15G20253, Ftri15G24831 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G55910.1, AT5G59520.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10011655m.g.v1.0, Thhalv10013963m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g41510.v2.2, Sp6g21230.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g039140.2N, BniB05g039100.2N, BniB07g000490.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq08G2111, Ceq08G2115 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl01G1634, Cgl08G2214 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g11200 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0070s00015.v1.0 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG05.2021, evm.TU.LG09.1237 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00016211 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G10424, Lb6G31592 |
| Poaceae | Echinochloa crus-galli | 4 | AH01.3319, BH01.3735, BH02.4717, CH01.3898 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_1BG0098080, gene-QOZ80_3AG0252000 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.3HG0328430.1, HORVU.MOREX.r3.5HG0489470.1 ... |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_016786, gene-QYE76_059082, gene-QYE76_067336 ... |
| Poaceae | Oryza coarctata | 3 | Oco01G031050, Oco05G015840, Oco06G016380 |
| Poaceae | Oryza sativa | 4 | LOC_Os01g74110.1, LOC_Os03g29850.1, LOC_Os08g42150.1 ... |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G324200, gene-BS78_03G418500 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0201707, Pt_Chr0601123 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr01G024150, Chr02G000090, Chr05G034750 |
| Poaceae | Thinopyrum elongatum | 3 | Tel3E01G890900, Tel5E01G409600, Tel6E01G225600 |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC3AG074590, gene_TRIDC3BG085920 ... |
| Poaceae | Triticum aestivum | 7 | TraesCS3A02G527000.1, TraesCS3B02G595100.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb019840_P001, Zm00001eb139810_P001 |
| Poaceae | Zoysia japonica | 4 | nbis-gene-12133, nbis-gene-22492, nbis-gene-28055 ... |
| Poaceae | Zoysia macrostachya | 2 | Zma_g1019, Zma_g12019 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG02.1150, evm.TU.LG02.583, evm.TU.LG09.2093 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g05780 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_13_RagTag.886, evm.TU.Scaffold_8_RagTag.1636 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-30132, nbisL1-mrna-8777 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-384, nbisL1-mrna-5779 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-15061 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000015l.214, evm.TU.utg000018l.39 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003627 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9381 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-23763 |
| Salicaceae | Populus euphratica | 3 | populus_peu00793, populus_peu00917, populus_peu35700 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132605853, gene-LOC132617401 |
| Solanaceae | Solanum chilense | 2 | SOLCI001864700, SOLCI002310300 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107022653, gene-LOC107024055 |
| Tamaricaceae | Reaumuria soongarica | 3 | STRG.7722_chr05_-, gene_12092, gene_3287 |
| Tamaricaceae | Tamarix chinensis | 3 | TC05G2632, TC11G0106, TC11G2083 |