Basic Information
Locus ID:
Ag4G01784
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 248292175 | 248297671 | + | Ag4G01784 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.34 | 101,421.62 Da | 43.34 | 83.57 | -0.11 |
Protein Domain:
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18310.1 | 0 | |
| RefSeq | XP_017238212.1 | PREDICTED: uncharacterized protein LOC108211194 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A166A2U2 | Transcription factor WD40-like family OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_009432 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 10.779753 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 10.009392 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 6.82258 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 8.56106 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 9.146165 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 10.467636 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 8.619144 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 9.604773 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 11.413787 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 11.539804 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 12.871204 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 13.372286 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 13.351093 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 9.685581 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 1.96049 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 2.246836 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 2.820547 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 3.492769 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 3.390836 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 3.166204 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 3.160002 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 3.306973 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 4.420829 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 2.838387 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 4.530204 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 4.591193 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 4.963629 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 4.129304 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 4.492005 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.863873 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 2.246407 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 1.660868 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 1.834889 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 2.539056 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 2.825679 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 1.045877 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.779391 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.865877 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 3.81359 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 2.393869 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 1.139322 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 1.684752 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 3.365859 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 12.906039 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 9.1395 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 2.813563 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 8.181002 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 9.189204 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 8.555682 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 10.05718 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg10742 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_20480, gene_9065 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah037782 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g202660 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg43641 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg18267 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00020357 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl78051, Sgl80556 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000017186 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.9AG0000690, CQ.Regalona.r1.9BG0021690 |
| Apiaceae | Apium graveolens | 1 | Ag4G01784 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G003270, COCNU_06G003280 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103697887, gene-LOC103716030 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.396.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri15G25136, Ftri5G15556 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G18310.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10003730m.g.v1.0, Thhalv10020051m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g16450.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g046220.2N, BniB08g051880.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2805 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2959 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno16g04140 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g17100 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-8660, nbisL1-mrna-8661 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.808 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00028132 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G19892 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0393090.1.CDS1 |
| Poaceae | Oryza coarctata | 2 | Oco05G007690, Oco06G007990 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g13720.1, LOC_Os09g01700.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G423000 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G027920, Chr01G029010, Chr12G010490, Chr12G011530 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G397100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG010160, gene_TRIDC4BG040450 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G072900.1.cds1, TraesCS4B02G229000.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb399070_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-3925, nbis-gene-53873 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g26580, Zma_g4055 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG04.1694 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc09g04600 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.757 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-1202 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-4178 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-6435 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000019l.316 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012647 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-5219 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-13194 |
| Salicaceae | Populus euphratica | 1 | populus_peu29651 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132645188 |
| Solanaceae | Solanum chilense | 1 | SOLCI002883700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008296 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_132 |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G0571 |
| Zosteraceae | Zostera marina | 1 | Zosma05g13760.v3.1 |