halophFGD

Basic Information

Locus ID: Ag4G01742

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: zinc finger CCCH domain-containing protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr4	243133944	243144547	+	Ag4G01742

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.13	48,729.44 Da	33.22	71.86	-0.35

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00400	WD domain, G-beta repeat	311	345	0.0023	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	275	306	0.088	IPR001680
Pfam	PF00642	Zinc finger C-x8-C-x5-C-x3-H type (and similar)	120	141	9.7E-8	IPR000571
Pfam	PF00400	WD domain, G-beta repeat	149	185	2.6E-4	IPR001680
SUPERFAMILY	SSF50978	WD40 repeat-like	145	434	3.07E-47	IPR036322
SUPERFAMILY	SSF90229	CCCH zinc finger	117	140	2.62E-6	IPR036855
Gene3D	G3DSA:2.130.10.10	-	271	438	3.5E-28	IPR015943
Gene3D	G3DSA:3.30.1370.210	-	14	75	2.5E-5	-
Gene3D	G3DSA:2.130.10.10	-	130	270	1.9E-19	IPR015943
SMART	SM00320	WD40_4	309	346	1.2E-4	IPR001680
SMART	SM00320	WD40_4	350	393	0.99	IPR001680
SMART	SM00320	WD40_4	146	185	1.2E-5	IPR001680
SMART	SM00320	WD40_4	225	262	17.0	IPR001680
SMART	SM00320	WD40_4	396	433	0.84	IPR001680
SMART	SM00356	c3hfinal6	34	58	0.073	IPR000571
SMART	SM00320	WD40_4	269	306	0.0051	IPR001680
SMART	SM00356	c3hfinal6	118	142	2.8E-6	IPR000571
ProSiteProfiles	PS50103	Zinc finger C3H1-type profile.	33	59	8.793457	IPR000571
ProSiteProfiles	PS50103	Zinc finger C3H1-type profile.	116	143	14.426917	IPR000571
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	276	315	12.045688	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	153	194	13.516088	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	153	185	10.970139	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	276	309	9.230148	-
PRINTS	PR00320	G protein beta WD-40 repeat signature	172	186	1.5E-6	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	293	307	1.5E-6	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	333	347	1.5E-6	IPR020472
MobiDBLite	mobidb-lite	consensus disorder prediction	12	30	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	30	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding) GO:0046872 (metal ion binding)

KEGG Pathway

KO Term:

K10260 (F-box and WD-40 domain protein 7)

Pathway:

ko04120 (Ubiquitin mediated proteolysis) map04120 (Ubiquitin mediated proteolysis)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G25440.1	zinc finger WD40 repeat protein 1.
RefSeq	XP_017242680.1	PREDICTED: zinc finger CCCH domain-containing protein 48-like [Daucus carota subsp. sativus]
Swiss-Prot	Q9FNZ2	Zinc finger CCCH domain-containing protein 48 OS=Arabidopsis thaliana OX=3702 GN=ZFWD1 PE=2 SV=1
TrEMBL	A0A166A257	Zinc finger CCCH domain-containing protein 48-like OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_009404 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	33.632462	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	25.538357	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	35.789234	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	34.45797	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	32.217716	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	34.39183	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	31.200108	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	37.733902	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	46.934612	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	42.682838	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	48.114449	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	47.896961	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	48.54361	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	40.510426	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	24.619062	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	26.620304	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	24.007219	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	25.290136	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	20.812056	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	32.124577	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	30.082956	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	30.043896	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	34.555214	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	30.529404	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	28.158957	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	31.419399	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	27.944906	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	25.349571	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	29.850494	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	18.718811		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	22.959892		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	22.322517		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	28.021812		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	28.005474		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	29.182055		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	27.370014		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	24.441927		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	27.260645		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	22.241907	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	17.870378	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	14.577032	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	47.881866	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	39.164135	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	45.078369	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	43.238449	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	51.6292	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	34.867695	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	35.190212	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	40.564632	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	34.191273	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg10154, jg14043, jg2340, jg29301
Aizoaceae	Mesembryanthemum crystallinum	2	gene_1388, gene_3174
Amaranthaceae	Atriplex hortensis	2	Ah018984, Ah031355
Amaranthaceae	Beta vulgaris	2	BVRB_8g191380, BVRB_8g191390
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg15485, Sbi_jg56296
Amaranthaceae	Salicornia europaea	1	Seu_jg26761
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00006608, GOSA_00008943
Amaranthaceae	Suaeda glauca	4	Sgl02069, Sgl07222, Sgl74130, Sgl77645
Amaranthaceae	Chenopodium album	5	gene:ENSEOMG00000000705, gene:ENSEOMG00000004802 ... gene:ENSEOMG00000028815, gene:ENSEOMG00000040014, gene:ENSEOMG00000046367
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.3AG0002180, CQ.Regalona.r1.3BG0002300 ... CQ.Regalona.r1.7AG0021940, CQ.Regalona.r1.7BG0024510
Anacardiaceae	Pistacia vera	2	pistato.v30003610, pistato.v30182120
Apiaceae	Apium graveolens	4	Ag10G00202, Ag2G01960, Ag4G01742, Ag8G00755
Arecaceae	Cocos nucifera	2	COCNU_07G007240, scaffold000778G000030
Arecaceae	Phoenix dactylifera	1	gene-LOC103711123
Asparagaceae	Asparagus officinalis	8	AsparagusV1_01.3628.V1.1, AsparagusV1_04.2108.V1.1 ... AsparagusV1_04.2986.V1.1, AsparagusV1_04.2990.V1.1, AsparagusV1_08.2958.V1.1, AsparagusV1_09.778.V1.1, AsparagusV1_10.997.V1.1, AsparagusV1_10.998.V1.1
Asteraceae	Flaveria trinervia	4	Ftri12G31744, Ftri8G33145, Ftri9G00006, FtriNA05352
Brassicaceae	Arabidopsis thaliana	4	AT4G25440.1, AT5G40880.1, AT5G49200.1, AT5G51980.2
Brassicaceae	Eutrema salsugineum	4	Thhalv10013582m.g.v1.0, Thhalv10025269m.g.v1.0 ... Thhalv10027743m.g.v1.0, Thhalv10027745m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp6g14230.v2.2, Sp7g01600.v2.2, Sp7g23490.v2.2
Brassicaceae	Brassica nigra	8	BniB01g026530.2N, BniB01g026590.2N, BniB02g029520.2N ... BniB02g029960.2N, BniB03g040680.2N, BniB03g053290.2N, BniB05g011810.2N, BniB08g017560.2N
Casuarinaceae	Casuarina equisetifolia	16	Ceq01G1037, Ceq01G1048, Ceq01G1534, Ceq02G1793, Ceq02G2070 ... Ceq04G1031, Ceq04G1039, Ceq04G1042, Ceq04G1051, Ceq05G2127, Ceq08G1499, Ceq08G1617, Ceq08G1639, Ceq08G1643, Ceq08G1752, Ceq09G1260
Casuarinaceae	Casuarina glauca	21	Cgl01G1150, Cgl01G1209, Cgl01G1220, Cgl01G1699, Cgl02G1853 ... Cgl02G1865, Cgl02G2141, Cgl04G1117, Cgl04G1171, Cgl04G1180, Cgl05G2188, Cgl05G2190, Cgl05G2209, Cgl08G1478, Cgl08G1531, Cgl08G1656, Cgl08G1680, Cgl08G1683, Cgl08G1690, Cgl08G1788, Cgl09G1348
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno14g01870, gene.Cymno14g01880
Dunaliellaceae	Dunaliella salina	1	Dusal.0698s00001.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate03g11440, gene.Thate08g03670, gene.Thate08g03720
Nitrariaceae	Nitraria sibirica	5	evm.TU.LG01.2214, evm.TU.LG04.955, evm.TU.LG04.961 ... evm.TU.LG04.963, evm.TU.LG04.964
Plantaginaceae	Plantago ovata	5	Pov_00019507, Pov_00028600, Pov_00028769, Pov_00035026 ... Pov_00040895
Plumbaginaceae	Limonium bicolor	2	Lb1G04398, Lb1G04431
Poaceae	Echinochloa crus-galli	9	AH01.5287, AH02.353, AH05.3464, AH07.2993, BH02.379 ... BH07.2816, CH01.5523, CH02.418, CH07.2896
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_1BG0061370, gene-QOZ80_1BG0061390 ... gene-QOZ80_2AG0140780, gene-QOZ80_2BG0196390
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.3HG0236950.1, HORVU.MOREX.r3.6HG0603760.2 ... HORVU.MOREX.r3.4HG0407530.1.CDS1
Poaceae	Lolium multiflorum	8	gene-QYE76_000717, gene-QYE76_008723, gene-QYE76_024346 ... gene-QYE76_048188, gene-QYE76_050198, gene-QYE76_050733, gene-QYE76_068993, gene-QYE76_070820
Poaceae	Oryza coarctata	6	Oco01G003770, Oco02G003840, Oco03G018100, Oco04G018850 ... Oco05G002780, Oco06G002760
Poaceae	Oryza sativa	5	LOC_Os01g09252.1, LOC_Os02g45480.1, LOC_Os03g05210.1 ... LOC_Os03g05250.1, LOC_Os04g48375.1
Poaceae	Paspalum vaginatum	2	gene-BS78_03G034600, gene-BS78_04G240500
Poaceae	Puccinellia tenuiflora	9	Pt_Chr0100064, Pt_Chr0100084, Pt_Chr0200021, Pt_Chr0203712 ... Pt_Chr0206594, Pt_Chr0403282, Pt_Chr0405571, Pt_Chr0603331, Pt_Chr0700307
Poaceae	Sporobolus alterniflorus	7	Chr02G020610, Chr03G006120, Chr03G006130, Chr03G006140 ... Chr06G005140, Chr09G023570, Chr15G006720
Poaceae	Thinopyrum elongatum	3	Tel3E01G189800, Tel4E01G515900, Tel6E01G478600
Poaceae	Triticum dicoccoides	6	gene_TRIDC3AG013470, gene_TRIDC3BG018020 ... gene_TRIDC4AG055630, gene_TRIDC4BG052810, gene_TRIDC6AG039630, gene_TRIDC6BG046540
Poaceae	Triticum aestivum	8	TraesCS3A02G109600.1, TraesCS3D02G111400.1 ... TraesCS4A02G410400.1.cds1, TraesCS4B02G310500.1.cds1, TraesCS4D02G308400.1.cds1, TraesCS6A02G257200.1, TraesCS6B02G267900.1, TraesCS6D02G238400.3
Poaceae	Zea mays	3	Zm00001eb088450_P001, Zm00001eb121510_P001 ... Zm00001eb250580_P003
Poaceae	Zoysia japonica	5	nbis-gene-22274, nbis-gene-36001, nbis-gene-6562 ... nbis-gene-6565, nbis-gene-9161
Poaceae	Zoysia macrostachya	4	Zma_g10203, Zma_g10204, Zma_g14121, Zma_g16871
Portulacaceae	Portulaca oleracea	8	evm.TU.LG03.578, evm.TU.LG10.1251, evm.TU.LG11.1581 ... evm.TU.LG12.1152, evm.TU.LG19.1212, evm.TU.LG24.1214, evm.TU.LG25.760, evm.TU.LG26.856
Posidoniaceae	Posidonia oceanica	1	gene.Posoc06g07270
Rhizophoraceae	Bruguiera sexangula	5	evm.TU.Scaffold_11_RagTag.1326, evm.TU.Scaffold_4_RagTag.173 ... evm.TU.Scaffold_14_RagTag.542, evm.TU.Scaffold_1_RagTag.1170, evm.TU.Scaffold_2_RagTag.1165
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-12632, nbisL1-mrna-17811, nbisL1-mrna-29176 ... nbisL1-mrna-6450
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-12959, nbisL1-mrna-16215, nbisL1-mrna-1726 ... nbisL1-mrna-6824
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-18829, nbisL1-mrna-2117, nbisL1-mrna-8204 ... nbisL1-mrna-8206
Rhizophoraceae	Kandelia candel	4	add.evm.TU.utg000007l.38, add.evm.TU.utg000010l.145 ... evm.TU.utg000008l.104, evm.TU.utg000016l.804
Rhizophoraceae	Kandelia obovata	3	Maker00000881, Maker00009084, Maker00017327
Rhizophoraceae	Rhizophora apiculata	6	nbisL1-mrna-1044, nbisL1-mrna-10988, nbisL1-mrna-12431 ... nbisL1-mrna-23325, nbisL1-mrna-23326, nbisL1-mrna-2383
Rhizophoraceae	Rhizophora mangle	5	nbisL1-mrna-10569, nbisL1-mrna-13369, nbisL1-mrna-20635 ... nbisL1-mrna-5561, nbisL1-mrna-6234
Salicaceae	Populus euphratica	4	populus_peu27762, populus_peu29225, populus_peu30584 ... populus_peu34079
Solanaceae	Lycium barbarum	1	gene-LOC132631818
Solanaceae	Solanum pennellii	1	gene-LOC107015414
Tamaricaceae	Reaumuria soongarica	3	gene_15775, gene_15850, gene_5194
Tamaricaceae	Tamarix chinensis	5	TC06G1729, TC09G2144, TC09G2145, TC09G2148, TC09G2149
Zosteraceae	Zostera marina	1	Zosma03g26430.v3.1