halophFGD

Basic Information

Locus ID: Ag4G01717

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: F-Box protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr4	240405345	240407106	+	Ag4G01717

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.58	15,249.99 Da	36.75	72.64	-0.70

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID

Best hit

Source	Best Hit ID	Description
TAIR	AT2G02230.1	phloem protein 2-B1.
RefSeq	XP_017239060.1	PREDICTED: F-box protein PP2-B11-like [Daucus carota subsp. sativus]
Swiss-Prot	Q6NPT8	F-box protein PP2-B1 OS=Arabidopsis thaliana OX=3702 GN=PP2B1 PE=1 SV=1
TrEMBL	A0A445BMQ5	F-box domain-containing protein OS=Arachis hypogaea OX=3818 GN=Ahy_A09g045614 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	8.982118	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	4.883004	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	2.862779	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	4.905247	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	3.912263	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	4.152687	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	2.938977	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	1.357322	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	5.328987	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	7.380838	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	10.523575	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	7.894221	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	9.851532	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	6.326625	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	4.084479	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	2.543809	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	6.441867	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	6.261154	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	6.858431	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	3.599088	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	5.434865	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	8.241012	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	7.633442	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	6.241258	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	8.93185	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	6.687612	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	6.570919	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	6.796415	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	5.628527	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.581766		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	1.050391		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	1.234968		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	2.732369		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	4.983657		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	1.688906		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0.346991		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	1.781475		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0.805616		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	3.962306	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	2.1162	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0.599497	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	2.796219	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0.371433	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	17.684824	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	10.815977	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	2.466577	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	7.999516	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	12.431704	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	12.018507	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	19.927912	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Apiaceae	Apium graveolens	6	Ag10G02661, Ag2G00220, Ag4G01717, Ag7G01901, Ag7G01902 ... Ag7G01903