Basic Information
Locus ID:
Ag4G01682
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
tRNA-splicing endonuclease subunit sen54 N-term
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 236803028 | 236805472 | - | Ag4G01682 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.99 | 18,209.78 Da | 51.13 | 78.92 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G02370.1 | 0 | |
| RefSeq | XP_017224231.1 | PREDICTED: tRNA-splicing endonuclease subunit Sen54 isoform X2 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A175YI00 | tRNA_int_end_N2 domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_030722 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.627372 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 0 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 0.850334 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 0.554432 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 0.355407 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 0.501872 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 0 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.127839 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.242377 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 0.593411 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.119244 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.285289 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 0.365855 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 0.142866 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 1.366776 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg31336, jg33249 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_5073 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah013139, Ah035191 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g153400 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg14365, Sbi_jg42973, Sbi_jg45580, Sbi_jg53592 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg10206, Seu_jg11431 |
| Amaranthaceae | Suaeda aralocaspica | 3 | GOSA_00002107, GOSA_00014241, GOSA_00025643 |
| Amaranthaceae | Suaeda glauca | 6 | Sgl35648, Sgl35655, Sgl35696, Sgl40986, Sgl40994, Sgl41003 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000002922, gene:ENSEOMG00000006306 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.6AG0000660 |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30166310, pistato.v30186120, pistato.v30186170 |
| Apiaceae | Apium graveolens | 2 | Ag10G02338, Ag4G01682 |
| Arecaceae | Cocos nucifera | 1 | COCNU_02G008520 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_07.3472.V1.1, AsparagusV1_07.3473.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G32844 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G02370.2, AT3G57360.1 |
| Brassicaceae | Eutrema salsugineum | 4 | Thhalv10006455m.g.v1.0, Thhalv10008553m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g05240.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g031070.2N, BniB05p000032.2N, BniB08g072070.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1025 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl04G1156, Cgl04G1165 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g02580 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g10920 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2568 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00006733 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G07576 |
| Poaceae | Echinochloa crus-galli | 2 | BH03.2642, CH03.2849 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0540700, gene-QOZ80_6BG0493940 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.5HG0493400.1, HORVU.MOREX.r3.5HG0493430.1 |
| Poaceae | Lolium multiflorum | 6 | gene-QYE76_006450, gene-QYE76_056380, gene-QYE76_056382 ... |
| Poaceae | Oryza coarctata | 2 | Oco17G008740, Oco18G008820 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g32700.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G232400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0701470, Pt_Chr0701483 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr10G015020, Chr11G007270, Chr15G000470 |
| Poaceae | Thinopyrum elongatum | 4 | Tel5E01G449700, Tel5E01G450000, Tel5E01G450700 ... |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC1BG047790, gene_TRIDC5AG042380 ... |
| Poaceae | Triticum aestivum | 8 | TraesCS1B02G290300.1, TraesCS1D02G280400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb102310_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-10378 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g30592 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG01.1170, evm.TU.LG14.507, evm.TU.LG25.1274 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc08g11720 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_13_RagTag.572 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-24263, nbisL1-mrna-30497, nbisL1-mrna-8996 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-11233 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-15958 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000015l.307 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015736 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-4225, nbisL1-mrna-4227 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-15219, nbisL1-mrna-15220 |
| Salicaceae | Populus euphratica | 2 | populus_peu09754, populus_peu24736 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132607480 |
| Solanaceae | Solanum chilense | 2 | SOLCI002339600, SOLCI006284800 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107002559, gene-LOC107013943 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_11873 |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G1889 |
| Zosteraceae | Zostera marina | 1 | Zosma06g10790.v3.1 |