halophFGD

Basic Information

Locus ID: Ag4G01651

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Calmodulin-binding receptor-like cytoplasmic kinase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr4	228509927	228517983	+	Ag4G01651

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.65	41,921.81 Da	42.41	90.45	-0.19

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd14066	STKc_IRAK	94	360	2.62278E-95	-
Pfam	PF07714	Protein tyrosine and serine/threonine kinase	93	360	1.6E-50	IPR001245
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	74	363	7.55E-77	IPR011009
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	65	164	2.8E-26	-
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	165	373	6.1E-58	-
SMART	SM00220	serkin_6	88	362	2.2E-41	IPR000719
ProSiteProfiles	PS50011	Protein kinase domain profile.	88	362	40.725014	IPR000719
ProSitePatterns	PS00108	Serine/Threonine protein kinases active-site signature.	209	221	-	IPR008271
ProSitePatterns	PS00107	Protein kinases ATP-binding region signature.	94	120	-	IPR017441

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K04733 (interleukin-1 receptor-associated kinase 4 [EC:2.7.11.1])

Pathway:

ko04010 (MAPK signaling pathway) map04010 (MAPK signaling pathway) map04064 (NF-kappa B signaling pathway) map04620 (Toll-like receptor signaling pathway) map04621 (NOD-like receptor signaling pathway) ko04624 (Toll and Imd signaling pathway) map04624 (Toll and Imd signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G11520.1	calmodulin-binding receptor-like cytoplasmic kinase 3. high overall homology to CRCK1
RefSeq	XP_017242915.1	PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 [Daucus carota subsp. sativus]
Swiss-Prot	Q9ASQ5	Calmodulin-binding receptor-like cytoplasmic kinase 3 OS=Arabidopsis thaliana OX=3702 GN=CRCK3 PE=2 SV=1
TrEMBL	A0A165ZZE7	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_009329 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	10.413336	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	14.270693	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	12.268728	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	14.212771	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	14.716332	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	12.368585	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	12.182468	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	10.878185	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	28.014112	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	29.139458	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	33.459702	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	20.931456	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	21.305679	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	19.571789	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	6.266442	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	6.976368	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	5.67959	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	10.613055	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	8.818699	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	12.165158	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	11.640294	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	8.898314	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	9.672563	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	9.485869	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	8.253391	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	13.887424	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	10.578704	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	10.725308	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	12.53387	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	29.336018		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	34.977451		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	29.389685		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	38.056446		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	23.463615		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	47.067741		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	22.161125		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	17.832834		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	18.804043		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	19.418821	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	28.6611	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	18.916708	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	15.280464	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	14.137637	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	10.980705	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	10.742925	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	12.758587	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	10.256233	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	12.454129	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	13.729332	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	12.755813	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg16650, jg1940, jg29375, jg31613
Aizoaceae	Mesembryanthemum crystallinum	2	gene_1688, gene_8953
Amaranthaceae	Atriplex hortensis	2	Ah014277, Ah022975
Amaranthaceae	Beta vulgaris	3	BVRB_1g004350, BVRB_7g172780, BVRB_8g193440
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg1645, Sbi_jg25575, Sbi_jg34910, Sbi_jg4536, Sbi_jg9396 ... Sbi_jg49434
Amaranthaceae	Salicornia europaea	3	Seu_jg19218, Seu_jg3103, Seu_jg5945
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00000470, GOSA_00003272, GOSA_00011027
Amaranthaceae	Suaeda glauca	6	Sgl11045, Sgl16454, Sgl41943, Sgl46735, Sgl72854, Sgl76384
Amaranthaceae	Chenopodium album	9	gene:ENSEOMG00000007975, gene:ENSEOMG00000010107 ... gene:ENSEOMG00000015911, gene:ENSEOMG00000029978, gene:ENSEOMG00000034488, gene:ENSEOMG00000038108, gene:ENSEOMG00000038303, gene:ENSEOMG00000046160, gene:ENSEOMG00000047325
Amaranthaceae	Chenopodium quinoa	3	CQ.Regalona.r1.1AG0003130, CQ.Regalona.r1.8AG0022600 ... CQ.Regalona.r1.8BG0019840
Anacardiaceae	Pistacia vera	2	pistato.v30004730, pistato.v30061810
Apiaceae	Apium graveolens	5	Ag11G04147, Ag2G02858, Ag4G01651, Ag6G01579, Ag6G02150
Arecaceae	Cocos nucifera	8	COCNU_01G010440, COCNU_01G010450, COCNU_01G018270 ... COCNU_07G009990, COCNU_09G008420, COCNU_10G007600, COCNU_11G007960, COCNU_16G008640
Arecaceae	Phoenix dactylifera	8	gene-LOC103697238, gene-LOC103705474, gene-LOC103706483 ... gene-LOC103710368, gene-LOC103711478, gene-LOC103715467, gene-LOC103715903, gene-LOC120110857
Asparagaceae	Asparagus officinalis	4	AsparagusV1_01.118.V1.1, AsparagusV1_05.3292.V1.1 ... AsparagusV1_07.1868.V1.1, AsparagusV1_07.42.V1.1
Asteraceae	Flaveria trinervia	6	Ftri10G12667, Ftri11G17325, Ftri14G14516, Ftri4G13704 ... Ftri8G17733, FtriNA09142
Brassicaceae	Arabidopsis thaliana	3	AT2G11520.1, AT4G00330.1, AT5G58940.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10013432m.g.v1.0, Thhalv10022650m.g.v1.0 ... Thhalv10028705m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp3g26330.v2.2, Sp6g00390.v2.2, Sp6g20640.v2.2
Brassicaceae	Brassica nigra	5	BniB01g014030.2N, BniB02g011150.2N, BniB02g038370.2N ... BniB06g037040.2N, BniB08g042540.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq02G0958, Ceq06G1402, Ceq08G1950
Casuarinaceae	Casuarina glauca	3	Cgl02G0988, Cgl06G1465, Cgl08G2026
Cymodoceaceae	Cymodocea nodosa	7	gene.Cymno02g16180, gene.Cymno03g04380, gene.Cymno05g20000 ... gene.Cymno05g20010, gene.Cymno09g05220, gene.Cymno10g09850, gene.Cymno11g06120
Hydrocharitaceae	Thalassia testudinum	6	gene.Thate01g18410, gene.Thate01g21910, gene.Thate01g34790 ... gene.Thate02g00460, gene.Thate03g21170, gene.Thate05g01500
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-2812, nbisL1-mrna-70
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG04.843, evm.TU.LG07.598, evm.TU.LG09.1151
Plantaginaceae	Plantago ovata	1	Pov_00016695
Plumbaginaceae	Limonium bicolor	9	Lb1G03789, Lb1G03812, Lb2G11096, Lb2G11097, Lb3G17887 ... Lb3G17888, Lb3G17890, Lb3G19127, Lb5G28626
Poaceae	Echinochloa crus-galli	19	AH01.439, AH01.4963, AH02.3895, AH03.1273, AH07.3981 ... AH09.1385, AH09.1482, BH01.301, BH01.4902, BH02.3919, BH03.1430, BH07.3796, BH07.4229, BH09.1665, CH01.140, CH01.5502, CH03.1576, CH07.3854, CH09.1754
Poaceae	Eleusine coracana subsp. coracana	11	gene-QOZ80_1AG0040170, gene-QOZ80_1BG0090210 ... gene-QOZ80_2AG0150880, gene-QOZ80_2BG0206300, gene-QOZ80_3AG0210050, gene-QOZ80_3AG0233750, gene-QOZ80_3BG0255200, gene-QOZ80_3BG0294170, gene-QOZ80_4BG0342890, gene-QOZ80_6AG0522860, gene-QOZ80_6BG0474370
Poaceae	Hordeum vulgare	6	HORVU.MOREX.r3.2HG0179650.1, HORVU.MOREX.r3.3HG0301720.1 ... HORVU.MOREX.r3.4HG0408180.1, HORVU.MOREX.r3.5HG0468530.1, HORVU.MOREX.r3.5HG0527720.1, HORVU.MOREX.r3.6HG0630590.1
Poaceae	Lolium multiflorum	6	gene-QYE76_003955, gene-QYE76_026371, gene-QYE76_044944 ... gene-QYE76_056423, gene-QYE76_060601, gene-QYE76_070750
Poaceae	Oryza coarctata	11	Oco02G026010, Oco03G025650, Oco04G026110, Oco05G002950 ... Oco05G027760, Oco06G002940, Oco06G028720, Oco07G010010, Oco08G009820, Oco17G000440, Oco18G000390
Poaceae	Oryza sativa	7	LOC_Os01g63280.2, LOC_Os02g57560.1, LOC_Os03g05470.1 ... LOC_Os03g61060.1, LOC_Os04g42480.1, LOC_Os09g03620.1, LOC_Os10g19850.1
Poaceae	Paspalum vaginatum	6	gene-BS78_01G026100, gene-BS78_01G480300 ... gene-BS78_02G143100, gene-BS78_03G338900, gene-BS78_04G323600, gene-BS78_06G151700
Poaceae	Puccinellia tenuiflora	11	Pt_Chr0105793, Pt_Chr0105871, Pt_Chr0300033, Pt_Chr0302207 ... Pt_Chr0601508, Pt_Chr0601960, Pt_Chr0604122, Pt_Chr0604460, Pt_Chr0604519, Pt_Chr0605598, Pt_Chr0705007
Poaceae	Sporobolus alterniflorus	13	Chr01G001220, Chr04G004500, Chr05G028890, Chr07G007070 ... Chr10G004330, Chr11G014660, Chr12G032860, Chr15G000500, Chr21G007090, Chr23G009390, Chr25G010350, Chr26G010330, Chr30G010080
Poaceae	Thinopyrum elongatum	6	Tel2E01G626100, Tel3E01G584100, Tel4E01G521300 ... Tel5E01G279000, Tel5E01G774000, Tel6E01G727000
Poaceae	Triticum dicoccoides	11	gene_TRIDC2AG051860, gene_TRIDC2BG055230 ... gene_TRIDC3AG052770, gene_TRIDC4AG055270, gene_TRIDC4BG053300, gene_TRIDC5AG027090, gene_TRIDC5AG069430, gene_TRIDC5BG028180, gene_TRIDC5BG075010, gene_TRIDC6AG058730, gene_TRIDC6BG069490
Poaceae	Triticum aestivum	17	TraesCS2A02G357800.1, TraesCS2B02G377100.1 ... TraesCS2D02G356600.1, TraesCS3A02G366500.1, TraesCS3B02G398100.1, TraesCS3D02G359400.1, TraesCS4A02G414700.1, TraesCS4B02G315400.1, TraesCS4D02G312400.1, TraesCS5A02G163300.1, TraesCS5B02G160500.1, TraesCS5B02G501300.2, TraesCS5D02G168100.2, TraesCS5D02G501800.1, TraesCS6A02G399500.1, TraesCS6B02G439700.1, TraesCS6D02G383700.1
Poaceae	Zea mays	7	Zm00001eb003890_P002, Zm00001eb025560_P003 ... Zm00001eb078090_P001, Zm00001eb147770_P002, Zm00001eb191110_P001, Zm00001eb211440_P001, Zm00001eb426060_P003
Poaceae	Zoysia japonica	6	nbis-gene-16641, nbis-gene-2896, nbis-gene-31637 ... nbis-gene-39781, nbis-gene-43724, nbis-gene-5201
Poaceae	Zoysia macrostachya	7	Zma_g11553, Zma_g17440, Zma_g20002, Zma_g2068, Zma_g21572 ... Zma_g2459, Zma_g29770
Portulacaceae	Portulaca oleracea	6	evm.TU.LG16.1606, evm.TU.LG19.1011, evm.TU.LG19.942 ... evm.TU.LG24.1016, evm.TU.LG24.943, evm.TU.LG26.63
Posidoniaceae	Posidonia oceanica	5	gene.Posoc01g40590, gene.Posoc04g12650, gene.Posoc06g10040 ... gene.Posoc08g08850, gene.Posoc10g04200
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.Scaffold_10_RagTag.79, evm.TU.Scaffold_13_RagTag.899 ... evm.TU.Scaffold_4_RagTag.2281, evm.TU.Scaffold_9_RagTag.525
Rhizophoraceae	Carallia pectinifolia	5	nbisL1-mrna-12899, nbisL1-mrna-21643, nbisL1-mrna-25175 ... nbisL1-mrna-30110, nbisL1-mrna-30115
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-10322, nbisL1-mrna-17101, nbisL1-mrna-21306
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-16270, nbisL1-mrna-16517, nbisL1-mrna-5020 ... nbisL1-mrna-7339
Rhizophoraceae	Kandelia candel	4	evm.TU.utg000003l.254, evm.TU.utg000008l.1334 ... evm.TU.utg000015l.532, evm.TU.utg000033l.53
Rhizophoraceae	Kandelia obovata	3	Maker00000886, Maker00014586, Maker00017750
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-16721, nbisL1-mrna-1753, nbisL1-mrna-1849
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-14481, nbisL1-mrna-19623, nbisL1-mrna-20883 ... nbisL1-mrna-22304
Salicaceae	Populus euphratica	4	populus_peu05715, populus_peu27669, populus_peu31644 ... populus_peu35759
Solanaceae	Lycium barbarum	2	gene-LOC132603124, gene-LOC132632799
Solanaceae	Solanum chilense	2	SOLCI005495300, SOLCI006463600
Solanaceae	Solanum pennellii	3	gene-LOC107012096, gene-LOC107026175, gene-LOC107032253
Tamaricaceae	Reaumuria soongarica	3	STRG.12224_chr02_+, STRG.4978_chr03_-, gene_15221
Tamaricaceae	Tamarix chinensis	3	TC09G2245, TC10G1201, TC11G0162
Zosteraceae	Zostera marina	4	Zosma01g40930.v3.1, Zosma04g06480.v3.1, Zosma04g21310.v3.1 ... Zosma04g24570.v3.1